View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_382 (Length: 249)
Name: NF10954A_low_382
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_382 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 34691011 - 34691251
Alignment:
| Q |
1 |
tgtaacttactgtcatagatcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttg |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691011 |
tgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttg |
34691110 |
T |
|
| Q |
101 |
cagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34691111 |
cagttgtgtctgttaaatgcttttggaaagcttacaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcg |
34691210 |
T |
|
| Q |
201 |
tgttctttggttgctaaaagacagatatcattatattattc |
241 |
Q |
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| T |
34691211 |
tgttctttggttgctaaaagacagatatcattgtattattc |
34691251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 26988936 - 26989176
Alignment:
| Q |
1 |
tgtaacttactgtcatagatcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttg |
100 |
Q |
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| T |
26988936 |
tgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttg |
26989035 |
T |
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| Q |
101 |
cagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcg |
200 |
Q |
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| T |
26989036 |
cagttgtgtctgttaaatgcttttggaaagtttgcaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgttcg |
26989135 |
T |
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| Q |
201 |
tgttctttggttgctaaaagacagatatcattatattattc |
241 |
Q |
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| T |
26989136 |
tgttctttggttgctaaaagacagatatcattgtattattc |
26989176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 27028148 - 27028237
Alignment:
| Q |
53 |
ttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc---------agttgtgtctgttaaatgcttttggaaagctt |
133 |
Q |
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| T |
27028148 |
ttttgctgaaagcgtgaaatgctggcattatacagctttcttggtttgctagtgtcttagttatgtttgttaaatgcttttggaaagctt |
27028237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 27076220 - 27076180
Alignment:
| Q |
101 |
cagttgtgtctgttaaatgcttttggaaagcttacaacaag |
141 |
Q |
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| T |
27076220 |
cagttgtgtttgttaaatgcttttggaaagcttgcaacaag |
27076180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 27076303 - 27076251
Alignment:
| Q |
49 |
catcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc |
101 |
Q |
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|||||||||||||||| | ||| || |||||||||||||||||||||||||| |
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| T |
27076303 |
catcttttgctgaaagcgtgaaacgcaggcattatacagctttcttggtttgc |
27076251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 241
Target Start/End: Complemental strand, 27076156 - 27076099
Alignment:
| Q |
184 |
gaataaacattcgttcgtgttctttggttgctaaaagacagatatcattatattattc |
241 |
Q |
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||||||||| | |||| |||| |||||||||||||||||| |||||||| ||||||| |
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| T |
27076156 |
gaataaacagttgttcatgttatttggttgctaaaagacatatatcattgaattattc |
27076099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 21433246 - 21433282
Alignment:
| Q |
205 |
ctttggttgctaaaagacagatatcattatattattc |
241 |
Q |
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|||| ||||||||||||||||||||||| |||||||| |
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| T |
21433246 |
cttttgttgctaaaagacagatatcattgtattattc |
21433282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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