View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_386 (Length: 249)
Name: NF10954A_low_386
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_386 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 24014186 - 24013948
Alignment:
| Q |
11 |
cagagaggaaagaaggacgattgcacctgagcatgtattgaaagctttaggggtattcatctaatgaccaaaccatttaatctccaaattttgatgtgga |
110 |
Q |
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| T |
24014186 |
cagagaggaaagaaggacgattgcacctgagcatgtattgaaagctttaggggtattcatctaatgaacaaaccatttaatctccaaattttgatgtgga |
24014087 |
T |
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| Q |
111 |
tcctttttaattttaatttgattgcttatattatacgccctcttcttggacgttctgtgcattgatttgtatctttctcatgtggatccttttcaatggt |
210 |
Q |
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||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014086 |
tccttttcaattttaatttgattgcttatataatacgctctcttcttggacgttctgtgcattgatttgtatctttctcatgtggatccttttcaatggt |
24013987 |
T |
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| Q |
211 |
gttattcttgatttttctttgcattgtagttgggtttga |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
24013986 |
gttattcttgatttttctttgcattgtagttgggtttga |
24013948 |
T |
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