View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_389 (Length: 248)
Name: NF10954A_low_389
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_389 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 40822293 - 40822051
Alignment:
| Q |
7 |
tatggtgttgtaagagaggtgtatatgttgggtgaaagt-----aaagttgtacataactaattttaccttgttttacaccttgttattgctgtgtctaa |
101 |
Q |
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| T |
40822293 |
tatggtgttgtaagagaggtgtatatgttgggtgaaagttaagtaaagttgtacataactaattttgccttgttttacaccttgttattgttgtgtctaa |
40822194 |
T |
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| Q |
102 |
tttgttggaagtatcgtcaaacggatgatattgtattttttatattcttgtctttccttaaggaaataaattggcaaatcagaaagttataattttatga |
201 |
Q |
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| T |
40822193 |
tttgttggaagtatcgtcaaacggacgatattgtattttttatattcttgtctttccttaaggaaataaattggcaaatcagaaagttataattttatga |
40822094 |
T |
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| Q |
202 |
aaatgatatatagtttttatattctaggatcattgaattttta |
244 |
Q |
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| T |
40822093 |
aaatgatatatagtttttatattctaggatcattgaattttta |
40822051 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 20291718 - 20291804
Alignment:
| Q |
159 |
ttaaggaaataaattggcaaatcagaaagttataattttatgaaaatgatatatagtttttatattctaggatcattgaatttttaggat |
248 |
Q |
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| T |
20291718 |
ttaaggaagtaaatttgcaaat-agaaagttatagttttatgaaaatg--atatagtttttatattccagaatcattgactgtttaggat |
20291804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 20291637 - 20291676
Alignment:
| Q |
42 |
aagtaaagttgtacataactaattttaccttgttttacac |
81 |
Q |
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| T |
20291637 |
aagtaaagttgtacataactaattttgccttgttttacac |
20291676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Original strand, 20291688 - 20291720
Alignment:
| Q |
111 |
agtatcgtcaaacggatgatattgtatttttta |
143 |
Q |
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| T |
20291688 |
agtatagtcaaacggatgatattgtatttttta |
20291720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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