View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_39 (Length: 427)
Name: NF10954A_low_39
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 52033557 - 52033964
Alignment:
| Q |
20 |
ttaacatccttgttggctacattttattaatctacattcttattccaacggcttattggggatttaatctctataatgccaaaaacttccccatatactc |
119 |
Q |
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| T |
52033557 |
ttaacatccttgttggctacattttattaatctacattcttattccaacggcttattggggatttaatctctataatgccaaaaacttccccatatactc |
52033656 |
T |
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| Q |
120 |
taatgaactattcactgctcaaggtgtgagatacaatgtgacagctattgtgaacaacaagtttgagatagatatggatgcatataataatcaaggtcac |
219 |
Q |
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| T |
52033657 |
taatgaactattcagtgctcaaggtgtgagatacaatgtgacagctattgtgaacaacaagtttgagatagatatggatgcatataataatcaaggtcac |
52033756 |
T |
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| Q |
220 |
attaatatgagtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccatatttaatggaaagtaagtta |
319 |
Q |
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| T |
52033757 |
attaatatgagtatcttcttttctatttcctatggtattggctttgctgccattgtctctacactcactcacgttgccatatttaatggaaagtaagtta |
52033856 |
T |
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| Q |
320 |
tggttaagttacattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatatcatcaacttcaa |
419 |
Q |
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| T |
52033857 |
tggttaagttacattgcatatatagttctcaaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatatcatcaacttcaa |
52033956 |
T |
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| Q |
420 |
tcttcccg |
427 |
Q |
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| T |
52033957 |
tcttcccg |
52033964 |
T |
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