View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_390 (Length: 248)
Name: NF10954A_low_390
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_390 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 31700972 - 31700742
Alignment:
| Q |
8 |
gcagtatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtag |
106 |
Q |
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| T |
31700972 |
gcagtatccattgactccacatagaccatagtggtcacaatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtag |
31700873 |
T |
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| Q |
107 |
cgtggacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatga |
206 |
Q |
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| T |
31700872 |
cgtggacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatga |
31700773 |
T |
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| Q |
207 |
agttgtaattgtaaacgttattaggcttcat |
237 |
Q |
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| T |
31700772 |
agttgtaattgtaaacgttattaggcttcat |
31700742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 31723521 - 31723292
Alignment:
| Q |
12 |
tatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtagcgtg |
110 |
Q |
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| T |
31723521 |
tatccattgactccacatcgaccataatggtcacaatcgtctcctggtattcttgaataaatattccatgatttgtcgtcctttgaccatacgtatcgtg |
31723422 |
T |
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| Q |
111 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatgaagtt |
210 |
Q |
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| T |
31723421 |
gacgatcgttactggtttggttaagtaccacttttgatatttgagtactatctttgatgttccatgtgtaataaacctcttctttattgcagacaaaatt |
31723322 |
T |
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| Q |
211 |
gtaattgtaaacgttattaggcttcatctc |
240 |
Q |
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| T |
31723321 |
gtaactgaaaatagaattaggcttcatctc |
31723292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 31716276 - 31716051
Alignment:
| Q |
12 |
tatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtagcgtg |
110 |
Q |
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||||||||||||||| || ||||||| ||||||| | |||| | |||||| ||||||||| | ||||| ||||| ||||||||||||||| |||||||| |
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| T |
31716276 |
tatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgtcttttgaccatacgtagcgtg |
31716177 |
T |
|
| Q |
111 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatgaagtt |
210 |
Q |
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| T |
31716176 |
gacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctcttctttattccagacaaaatt |
31716077 |
T |
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| Q |
211 |
gtaattgtaaacgttattaggcttca |
236 |
Q |
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|||| || ||| | ||||||||||| |
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| T |
31716076 |
gtaactgaaaatatcattaggcttca |
31716051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 31722150 - 31721925
Alignment:
| Q |
12 |
tatccattgactcca-atagaccatagtggtcactatagtctgctggtatttttgaataaagcatccataattcgtcgtcttttgaccatatgtagcgtg |
110 |
Q |
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||||||||||||||| || ||||||| ||||||| | |||| | |||||| ||||||||| | ||||| ||||| ||||||||||||||| |||||||| |
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| T |
31722150 |
tatccattgactccacattgaccataatggtcacaaatgtctccaggtattcttgaataaaccctccatgattcgacgtcttttgaccatacgtagcgtg |
31722051 |
T |
|
| Q |
111 |
gacgttcataactggtttggttaagtaccacttttgatattagtgaactatctttgatgttccatgtgtaataaacctcttctttattgcagatgaagtt |
210 |
Q |
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| T |
31722050 |
gacgatctttactggtttggttaagtaccatttttgatacttgagaactatctttgatgttccatgtgtaataaacctcttctttattccagacaaaatt |
31721951 |
T |
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| Q |
211 |
gtaattgtaaacgttattaggcttca |
236 |
Q |
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| T |
31721950 |
gtaactgaaaatatcattaggcttca |
31721925 |
T |
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