View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_392 (Length: 248)
Name: NF10954A_low_392
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_392 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 2901798 - 2902028
Alignment:
| Q |
18 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2901798 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat |
2901897 |
T |
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| Q |
118 |
gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactgaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2901898 |
gtcatggaatttattgtttgttaaaatgacgtaggtactcgaggggatttgaactttgtcccttaagattattaggtcatgtttttattactgaactaaa |
2901997 |
T |
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| Q |
218 |
acctcatgaacagcgaaagctaacagtatat |
248 |
Q |
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||||||||||||||||||| |||||||||| |
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| T |
2901998 |
acctcatgaacagcgaaagagaacagtatat |
2902028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 2883229 - 2882994
Alignment:
| Q |
18 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagatacctttagaacacaat |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||| |
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| T |
2883229 |
acatcatgttgactaatatatgcagcagttctctgaggtacaaattcatccatcccatgtccattataagttactctccctgatacctggaggacacaac |
2883130 |
T |
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| Q |
118 |
gtcatggaatttattgtttgttaaaatg----acgtag-------------gtactcgaggggatttgaactttgtcccttaagattattaggtcatgtt |
200 |
Q |
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| T |
2883129 |
gacatcgaagttattatttatgaaagtgagacaaatagtcattttaataccgtactcgaggggatttgaactttctcccttaagattataaggtcaagtt |
2883030 |
T |
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| Q |
201 |
tttattactgaactgaaacctcatgaacagcgaaag |
236 |
Q |
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| T |
2883029 |
tttaccactgaactgaaaccccgtgaacagtgaaag |
2882994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2873027 - 2872944
Alignment:
| Q |
18 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagat |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |
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| T |
2873027 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccattccatatccattataagtcactctaccagat |
2872944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44226436 - 44226517
Alignment:
| Q |
18 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag |
99 |
Q |
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| T |
44226436 |
acatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag |
44226517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 44237234 - 44237315
Alignment:
| Q |
18 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag |
99 |
Q |
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| T |
44237234 |
acatcatgttggctgatataagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccag |
44237315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 44214266 - 44214350
Alignment:
| Q |
18 |
acatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccagata |
102 |
Q |
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| T |
44214266 |
acatcatgctggctgatataagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagata |
44214350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 39333905 - 39333840
Alignment:
| Q |
35 |
atatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccaga |
100 |
Q |
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|||||||||||||||||| || ||||||||| |||| |||| |||||||||||||| || ||||| |
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| T |
39333905 |
atatgcagcagttctttgggggacaaattcactcatctcatgaccattataagtcacccttccaga |
39333840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 39592655 - 39592727
Alignment:
| Q |
20 |
atcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcact |
92 |
Q |
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||||| |||||| | ||| |||||||||||||| ||||||||||| | |||| |||| ||||||||| ||||| |
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| T |
39592655 |
atcattttgactgacataagcagcagttctttggggtacaaattctttcatctcatgaccattataactcact |
39592727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 39345180 - 39345119
Alignment:
| Q |
39 |
gcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccaga |
100 |
Q |
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| T |
39345180 |
gcagcagttctttgggggacaaattcactcatctcatgaccattataagtcacccttccaga |
39345119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 39551815 - 39551864
Alignment:
| Q |
39 |
gcagcagttctttgaggtacaaattcatccatcccatgtccattataagt |
88 |
Q |
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||||||||||||||||| ||||| |||| |||| |||| ||||||||||| |
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| T |
39551815 |
gcagcagttctttgaggcacaaactcattcatctcatgaccattataagt |
39551864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 39578189 - 39578254
Alignment:
| Q |
26 |
ttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac |
91 |
Q |
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|||||| | ||| ||||||||||||||||||||||| |||| |||| |||| || || |||||||| |
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| T |
39578189 |
ttgactgacataagcagcagttctttgaggtacaaactcattcatctcatgaccgttgtaagtcac |
39578254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 39359725 - 39359673
Alignment:
| Q |
39 |
gcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcac |
91 |
Q |
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|||||||||||||| |||||||| ||| |||| |||| |||||||||||||| |
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| T |
39359725 |
gcagcagttctttggggtacaaactcactcatctcatgaccattataagtcac |
39359673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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