View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_394 (Length: 248)
Name: NF10954A_low_394
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_394 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6554769 - 6554532
Alignment:
| Q |
1 |
aatcattatcattttctgagtctaacctgatagaatggtacaatcaagctgggactagtcatgttgatgaatgcatatccaacattgcatttgttctgca |
100 |
Q |
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| T |
6554769 |
aatcattatcattttctgagtctaacctgatagaatggtacaatcaagctgggactagtcatgttgatgaatgcatatccaacattgcatttgttctgca |
6554670 |
T |
|
| Q |
101 |
atcaatgttgattccatgtgaataattaactaaaataaaaagaatgccaaaataaattaaacataggaagagaaaagcacttactctgaaatcaattggt |
200 |
Q |
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| T |
6554669 |
atcaatgttgattccatgtgaataattaactaaaataaaaagaatgccaaaataaattaaacataggaagagaaaagcacttactctgaaatcaattggt |
6554570 |
T |
|
| Q |
201 |
agatacacaaaatcataagctcctttatgatgtccatc |
238 |
Q |
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| T |
6554569 |
agatacacaaaatcataagctcctttatggtgttcatc |
6554532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 49057788 - 49058014
Alignment:
| Q |
5 |
attatcattttctgagtctaacctgatagaatggtacaatcaagctgggactagtcatgttgatgaatgcatatccaacattgcatttgttctgcaatca |
104 |
Q |
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| T |
49057788 |
attatcattttcggcagctaacctcatagaaaggtataatcaagctaggactagtcatgttgatgaatgcatatccagcattgcatttgttctgcaatca |
49057887 |
T |
|
| Q |
105 |
atgttgattccatgtgaataattaacta--aaataaaaagaatgccaaaataaattaaacataggaaga----------gaaaagcacttactctgaaat |
192 |
Q |
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| T |
49057888 |
atgttgattcaatgttaataattaagaaacaaataaaaggagttccaaaataaattaaacatttaaagataaaaaagataaaaaacacgtactctgaaat |
49057987 |
T |
|
| Q |
193 |
caattggtagatacacaaaatcataag |
219 |
Q |
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| T |
49057988 |
caattggtagatacacaaagtcataag |
49058014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 101
Target Start/End: Original strand, 40158350 - 40158384
Alignment:
| Q |
67 |
atgaatgcatatccaacattgcatttgttctgcaa |
101 |
Q |
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| T |
40158350 |
atgaatgcatatccaacattacatttgttctgcaa |
40158384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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