View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_4 (Length: 569)
Name: NF10954A_low_4
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 5 - 557
Target Start/End: Original strand, 28858501 - 28859053
Alignment:
| Q |
5 |
atggttaatgaacttcagataaggttgattcaaccgtaagtacttgaattcaactttgactggaacaatccttgatcaaactttacttacctctcagtca |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28858501 |
atggttaatgaacttcagataaggttgattcaaccgtaagtacttgaattcaactttgactggaacaatccttgatcaaactttacttacctctcagtca |
28858600 |
T |
|
| Q |
105 |
aaattcagattatcacaaccctttctcctaggaaacggaaggtttagaaaaataaaaagagcacaggctgcagaagagccaaggcgccaaatccaagctt |
204 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28858601 |
aaattcagattatcacagccctttctcctaggaaacggaaggtttagaaaaataaaaagagcacaggctgcagaagagccaaggcgccaaatccaagcct |
28858700 |
T |
|
| Q |
205 |
tacacattaatgctcattccaaatttgagcattttgttccataactaatgctctctatgtgccttcttaaatattatagacgtgttaagatttataaatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28858701 |
tacacattaatgctcattccaaatttgagcattttgttccataactaatgctctctatgtgccttcttaaatattatagacgtgttaagatttataaatg |
28858800 |
T |
|
| Q |
305 |
aagtacttaacagttgatacacggcattgatatatgtaatgtgatactgtgatttattcttaaacacggttgctgctaaattaatgaacataacagatta |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28858801 |
aagtacttaacagttgatacacggcattgatatatgtaatgtgatactgtgatttattcttaaacgcggttgctgctaaattaatgaacataacagatta |
28858900 |
T |
|
| Q |
405 |
taattgtaactgacatatgtatgatatattctttcgacgatcatctctgcaagtacacaggttatccatactagttatattacacacaggatatgtagtc |
504 |
Q |
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| T |
28858901 |
taattgtaactgacatatgtatgatatattctttcgacgatcatctctgcaagtacacaggttatccatactagttatattacacacaggatatgtagtc |
28859000 |
T |
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| Q |
505 |
tgtttaagcaagactttgcaggaaaaattacgagtttgaagacattgtatttt |
557 |
Q |
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| T |
28859001 |
tgtttaagcaagactttgcaggaaaaattacgagtttgaagacattgtatttt |
28859053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 28873838 - 28874118
Alignment:
| Q |
1 |
tcaaatggttaatgaacttcagataaggttgattcaaccgtaagtacttgaattcaactttgactggaacaatccttgatcaaactttacttacctctca |
100 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||| ||||||||||||| |
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| T |
28873838 |
tcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaactagaacagtccttgatcaaactctacttacctctca |
28873937 |
T |
|
| Q |
101 |
gtcaaaattcagattatcacaaccctttctcctaggaaacggaaggtttagaaaaataaaaagagcacaggctgcagaagagccaaggcgccaaatccaa |
200 |
Q |
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|||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||| |
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| T |
28873938 |
gtcaaaattcagattaccatagccctttctcctaggaaatagaaggtttagaaaaataaaaagaacacaggttgcagaagagccaaggcgctaaacccaa |
28874037 |
T |
|
| Q |
201 |
gctttacacattaatgctcattccaaatttgagcattttgttccataactaatgctctctatgtgccttcttaaatattat |
281 |
Q |
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||| | | |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28874038 |
gctctgcgcattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgccttcttaaatattat |
28874118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 287 - 557
Target Start/End: Original strand, 28843262 - 28843536
Alignment:
| Q |
287 |
tgttaagatttataaatgaagtacttaacagttgatacacggcattgatatatgtaatgtgatactgtgatttattcttaaacacggttgctgctaaatt |
386 |
Q |
| |
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|||| ||||||||||| || |||||||||||||||||||| |||||||||| ||| | ||||||||||||| ||||| ||||| |||||||||| ||| |
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| T |
28843262 |
tgtttagatttataaaagaggtacttaacagttgatacacagcattgatatgtgtgaagtgatactgtgatctattcctaaacgcggttgctgcccgatt |
28843361 |
T |
|
| Q |
387 |
aatgaacataacagattataattgtaactgacatatgtatgatatattctttcgacgatcatctctgcaag---tacacaggttatccatactagttata |
483 |
Q |
| |
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| |||| |||||||||||||||| |||||||||||| |||||||||||||||| | ||| |||||| || | |||| ||||| || |||| ||||||| |
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| T |
28843362 |
actgaatataacagattataattataactgacatatatatgatatattctttccatgattatctcttcatgtgctacaaaggttctcaataccagttata |
28843461 |
T |
|
| Q |
484 |
ttacacacaggatatgtagtctgtttaagcaagactttgcaggaa-aaattacgagtttgaagacattgtatttt |
557 |
Q |
| |
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||||| | ||||||| |||||||||| ||||||||||||||||| |||||| | ||| | ||||||||||||| |
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| T |
28843462 |
ttacaaattggatatgcagtctgtttatgcaagactttgcaggaacaaattatgtgttccatgacattgtatttt |
28843536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 431 - 557
Target Start/End: Original strand, 28874242 - 28874369
Alignment:
| Q |
431 |
tattctttcgacgatcatctctgcaagt---acacaggttatccatactagttatattacacacaggatatgtagtctgtttaagcaagactttgcagg- |
526 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||| || ||||| |
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| T |
28874242 |
tattctttcaacgatcatctctccaagtgttacacaggttctccatactagttatattacaaacagaatatggagtctgtttaagcaa---ttcgcagga |
28874338 |
T |
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| Q |
527 |
aaaaattacgagtttgaagacattgtatttt |
557 |
Q |
| |
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|||||||| ||||| |||||||||||||||| |
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| T |
28874339 |
aaaaattatgagttcgaagacattgtatttt |
28874369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 28874169 - 28874241
Alignment:
| Q |
314 |
acagttgatacacggcattgatatatgtaatgtgatactgtgatttattcttaaacacggttgctgctaaatt |
386 |
Q |
| |
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||||||||||||| |||| |||||||||||||||||||||| ||| ||||||||| |||||| ||||||||| |
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| T |
28874169 |
acagttgatacacaacattaatatatgtaatgtgatactgtgtttttttcttaaacgcggttgttgctaaatt |
28874241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 28843059 - 28843152
Alignment:
| Q |
61 |
tgactggaacaatccttgatcaaactttacttacctctcagtcaaaattcagattatcacaaccctttctcctaggaaacggaaggtttagaaaaa |
156 |
Q |
| |
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||||| ||||||||||| |||||||||||| || |||| ||| |||||| |||||| | |||||| |||||||||||||| |||||||||||| |
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| T |
28843059 |
tgacttgaacaatccttaatcaaactttacata--tctcggtcgaaattcgaattatcttatccctttttcctaggaaacggagggtttagaaaaa |
28843152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 28843171 - 28843238
Alignment:
| Q |
160 |
aaagagcacaggctgcagaagagccaaggcgccaaatccaagctttacacattaatgctcattccaaat |
228 |
Q |
| |
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||| |||| ||| ||||||| ||||| || ||||| |||||| ||||||||||||||||||||||||| |
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| T |
28843171 |
aaaaagcaaaggttgcagaatagcca-ggtgccaatcccaagccttacacattaatgctcattccaaat |
28843238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 326
Target Start/End: Original strand, 12880117 - 12880145
Alignment:
| Q |
298 |
ataaatgaagtacttaacagttgatacac |
326 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
12880117 |
ataaatgaagtacttaacagttgatacac |
12880145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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