View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_40 (Length: 427)

Name: NF10954A_low_40
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_40
NF10954A_low_40
[»] chr7 (14 HSPs)
chr7 (1-420)||(841773-842192)
chr7 (1-420)||(848949-849368)
chr7 (1-420)||(1206953-1207372)
chr7 (119-408)||(16290694-16290983)
chr7 (119-408)||(801827-802116)
chr7 (248-417)||(23883312-23883481)
chr7 (248-417)||(42634783-42634952)
chr7 (248-417)||(8814027-8814196)
chr7 (242-420)||(9466044-9466222)
chr7 (242-420)||(30373472-30373650)
chr7 (242-420)||(16396975-16397153)
chr7 (119-204)||(30373349-30373434)
chr7 (119-195)||(9466269-9466345)
chr7 (119-204)||(16396852-16396937)
[»] chr5 (18 HSPs)
chr5 (48-420)||(29896706-29897078)
chr5 (119-408)||(34465156-34465445)
chr5 (219-408)||(22955460-22955649)
chr5 (248-417)||(1801709-1801878)
chr5 (248-417)||(7258459-7258628)
chr5 (248-417)||(7790405-7790574)
chr5 (248-417)||(12391950-12392119)
chr5 (119-420)||(5443607-5443908)
chr5 (242-420)||(36379496-36379674)
chr5 (242-420)||(37004168-37004346)
chr5 (242-420)||(17953561-17953739)
chr5 (119-420)||(11947806-11948107)
chr5 (119-420)||(31516769-31517070)
chr5 (242-420)||(15788247-15788425)
chr5 (119-204)||(15788124-15788209)
chr5 (119-204)||(36379373-36379458)
chr5 (119-204)||(37004045-37004130)
chr5 (119-195)||(17953786-17953862)
[»] chr1 (3 HSPs)
chr1 (48-420)||(2339796-2340168)
chr1 (248-417)||(6201487-6201656)
chr1 (119-420)||(5632524-5632825)
[»] chr6 (11 HSPs)
chr6 (76-420)||(2411981-2412325)
chr6 (219-389)||(20054609-20054779)
chr6 (248-417)||(20044396-20044565)
chr6 (248-417)||(619668-619837)
chr6 (248-417)||(16821526-16821695)
chr6 (248-417)||(24147211-24147380)
chr6 (248-417)||(27513536-27513705)
chr6 (76-420)||(2410265-2410606)
chr6 (242-420)||(9139923-9140101)
chr6 (119-195)||(9139800-9139876)
chr6 (71-164)||(20054515-20054608)
[»] scaffold0387 (1 HSPs)
scaffold0387 (133-424)||(5723-6014)
[»] chr2 (3 HSPs)
chr2 (176-408)||(21763993-21764225)
chr2 (119-420)||(22945855-22946156)
chr2 (119-420)||(12380120-12380421)
[»] chr3 (12 HSPs)
chr3 (119-408)||(41436774-41437063)
chr3 (119-408)||(20439609-20439898)
chr3 (120-420)||(15596422-15596722)
chr3 (248-417)||(6197990-6198159)
chr3 (248-417)||(8807906-8808075)
chr3 (248-417)||(15533637-15533806)
chr3 (248-417)||(21611336-21611505)
chr3 (248-417)||(46397011-46397180)
chr3 (81-420)||(15914999-15915338)
chr3 (248-417)||(8620030-8620200)
chr3 (119-420)||(46376735-46377036)
chr3 (119-420)||(5954354-5954655)
[»] scaffold0019 (2 HSPs)
scaffold0019 (219-420)||(17294-17495)
scaffold0019 (71-161)||(17200-17290)
[»] scaffold0551 (2 HSPs)
scaffold0551 (248-417)||(9879-10048)
scaffold0551 (305-417)||(3822-3934)
[»] scaffold0183 (2 HSPs)
scaffold0183 (219-408)||(31828-32017)
scaffold0183 (52-164)||(32018-32130)
[»] scaffold0435 (1 HSPs)
scaffold0435 (248-420)||(12431-12603)
[»] chr4 (7 HSPs)
chr4 (248-408)||(15575638-15575798)
chr4 (239-417)||(16724575-16724753)
chr4 (248-417)||(14920939-14921108)
chr4 (248-417)||(15899271-15899440)
chr4 (248-417)||(18039850-18040019)
chr4 (248-417)||(15571510-15571679)
chr4 (248-417)||(22707540-22707709)
[»] chr8 (1 HSPs)
chr8 (248-417)||(21479703-21479872)
[»] scaffold0094 (1 HSPs)
scaffold0094 (120-420)||(38771-39071)
[»] scaffold1197 (1 HSPs)
scaffold1197 (245-389)||(2143-2287)
[»] scaffold0029 (2 HSPs)
scaffold0029 (239-389)||(74786-74936)
scaffold0029 (119-420)||(25623-25924)
[»] scaffold0441 (1 HSPs)
scaffold0441 (248-389)||(10654-10795)
[»] scaffold0104 (1 HSPs)
scaffold0104 (219-386)||(28843-29010)
[»] scaffold0002 (1 HSPs)
scaffold0002 (119-420)||(302366-302667)
[»] scaffold0595 (1 HSPs)
scaffold0595 (119-420)||(9440-9742)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 842192 - 841773
Alignment:
Q  1 tcgagtttggtgttgctgatacggttgctgctgatatggctgctcaagatactgttggaactgcggctgataacctggttgttgaatagcattggtagcg 100  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  842192 tcgaggttgttgttgctgatacggttgctgctgatatggctgctgaggatactgttggaactgcggctgataacccggttgttcaatagcattggtagcg 842093  T
Q  101 ggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgt 200  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |    
T  842092 ggtgtaatggtagcaacatgttgataggctgtataattttgctgaggcctcccatgggccaccataccgacctctggtgctttctttcttgggaagttat 841993  T
Q  201 tcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctcc 300  Q
    |||||||       ||||||||  | |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |    
T  841992 tcccaaatttcttggctccactgtcggaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagc 841893  T
Q  301 aaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactg 400  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||    
T  841892 aaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctg 841793  T
Q  401 acttgggccgcggtatctct 420  Q
    |||||||| |||||||||||    
T  841792 acttgggcagcggtatctct 841773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 849368 - 848949
Alignment:
Q  1 tcgagtttggtgttgctgatacggttgctgctgatatggctgctcaagatactgttggaactgcggctgataacctggttgttgaatagcattggtagcg 100  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  849368 tcgaggttgttgttgctgatacggttgctgctgatatggctgctgaggatactgttggaactgcggctgataacccggttgttcaatagcattggtagcg 849269  T
Q  101 ggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgt 200  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |    
T  849268 ggtgtaatggtagcaacatgttgataggctgtataattttgctgaggcctcccatgggccaccataccgacctctggtgctttctttcttgggaagttat 849169  T
Q  201 tcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctcc 300  Q
    |||||||       ||||||||  | |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |    
T  849168 tcccaaatttcttggctccactgtcggaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagc 849069  T
Q  301 aaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactg 400  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||    
T  849068 aaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctg 848969  T
Q  401 acttgggccgcggtatctct 420  Q
    |||||||| |||||||||||    
T  848968 acttgggcagcggtatctct 848949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 1207372 - 1206953
Alignment:
Q  1 tcgagtttggtgttgctgatacggttgctgctgatatggctgctcaagatactgttggaactgcggctgataacctggttgttgaatagcattggtagcg 100  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  1207372 tcgaggttgttgttgctgatacggttgctgctgatatggctgctgaggatactgttggaactgcggctgataacccggttgttcaatagcattggtagcg 1207273  T
Q  101 ggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgt 200  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |    
T  1207272 ggtgtaatggtagcaacatgttgataggctgtataattttgctgaggcctcccatgggccaccataccgacctctggtgctttctttcttgggaagttat 1207173  T
Q  201 tcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctcc 300  Q
    |||||||       ||||||||  | |||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  |    
T  1207172 tcccaaatttcttggctccactgtcggaagctccatctttaactaatcgtccttctcggactccttcttccaactgtacacccataccaaccatctcagc 1207073  T
Q  301 aaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactg 400  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||    
T  1207072 aaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaagatcttggtcatctctttctcctctatacgtgggctg 1206973  T
Q  401 acttgggccgcggtatctct 420  Q
    |||||||| |||||||||||    
T  1206972 acttgggcagcggtatctct 1206953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 119 - 408
Target Start/End: Original strand, 16290694 - 16290983
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||| ||||||| |||| |||||||| || |||||||||||||  ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  16290694 tgttgataggttggataagtttgctgaggccttccttgggccaccatactaacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 16290793  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| | ||||||||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||| ||  | |||||||||||| ||||    
T  16290794 cactggtagaagctccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccgaccatttcagcgaagttcttgggcgtact 16290893  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  16290894 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 16290983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 119 - 408
Target Start/End: Original strand, 801827 - 802116
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||| ||||||| |||| |||| ||| || ||||||||||||   ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  801827 tgttgataggttggataagtttgctgagaccttccttgggccaccataataacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 801926  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
     ||| | ||||||||||| ||| ||||| | ||||||||| |||||| ||||||| || ||||||||||||||||| ||  |||||||||||||| ||||    
T  801927 aactggtagaagctccattttttactaaacatccttctcggactccttcttccaattgcacacccatgccaaccatttcagcaaagttcttgggcgtact 802026  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||| ||||||||||||||||| || |||||||||||    
T  802027 tccgaccatcttctcgtagtagaactgactgagagtttttaagaagagtttggtcatttccttctcttctatacgtgggctgacttgggc 802116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 23883312 - 23883481
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  23883312 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 23883411  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  23883412 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 23883481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 42634783 - 42634952
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  42634783 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 42634882  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  42634883 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 42634952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 8814196 - 8814027
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  8814196 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 8814097  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  8814096 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 8814027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 420
Target Start/End: Complemental strand, 9466222 - 9466044
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9466222 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9466123  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9466122 aatgattcagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9466044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 420
Target Start/End: Original strand, 30373472 - 30373650
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||||||||||||||| | ||| || |    
T  30373472 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtacttccgaccatctttttgtaataaa 30373571  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  30373572 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaatccgtgggctgacttgggcagcggtgtctct 30373650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 420
Target Start/End: Original strand, 16396975 - 16397153
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  16396975 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 16397074  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  16397075 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 16397153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 30373349 - 30373434
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 204  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  30373349 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 30373434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 9466345 - 9466269
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaa 195  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || |||||    
T  9466345 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaa 9466269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 16396852 - 16396937
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 204  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||| ||| | |||||||||||| || ||||| | ||||||    
T  16396852 tgttgataggctggataagtttgttgaggccctccatgagtcaccatactgacttcttgttctttcttcctcgggaaatggttccc 16396937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 48 - 420
Target Start/End: Complemental strand, 29897078 - 29896706
Alignment:
Q  48 gatactgttggaactgcggctgataacctggttgttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgagg 147  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| |||||    
T  29897078 gatactgttggaactgcggctgataacccggttgttgaatagcattggtagcgggtgtaatggcagcaacatgctgataggctggataattttgctgagg 29896979  T
Q  148 cctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaac 247  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||       ||||||||  | ||||||||||||||||||||     
T  29896978 cctcccatgggccaccataccgacctctggtgctttctttcttgggaagttgttcccaaatttcttggctccactgtcggaagctccatctttaactaat 29896879  T
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  29896878 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaaatgat 29896779  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  29896778 tgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctct 29896706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 34465445 - 34465156
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||| ||||||| |||| |||||||| || |||||||||||||  ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  34465445 tgttgataggttggataagtttgctgaggccttccttgggccaccatactaacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 34465346  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||||    
T  34465345 cactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtact 34465246  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  34465245 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 34465156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 219 - 408
Target Start/End: Original strand, 22955460 - 22955649
Alignment:
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| ||||||| ||||| ||| ||||| ||||||||||| |||||| ||||||| ||||||||||| || ||||| ||| |||||||||||||| ||||    
T  22955460 cactggcagaagttccatttttgactaaacgtccttctcggactccttcttccaattgtacacccataccgaccatttctgcaaagttcttgggcgtact 22955559  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||||||||||||||||| ||| | ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  22955560 tccgaccatcttctcgtagtagaactgactaagagtttttaagaagaatttggtcatctccttctcttctatacgcgggctgacttgggc 22955649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 1801878 - 1801709
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  1801878 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 1801779  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  1801778 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 1801709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 7258459 - 7258628
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7258459 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7258558  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  7258559 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 7258628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 7790574 - 7790405
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  7790574 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 7790475  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  7790474 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 7790405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 12391950 - 12392119
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  12391950 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 12392049  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  12392050 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 12392119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 119 - 420
Target Start/End: Original strand, 5443607 - 5443908
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || ||||| | ||||||          |  |    
T  5443607 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaaatggttcccggtcttcttggtcc 5443706  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || | |||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  5443707 cactggcaggagttgcattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 5443806  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || ||||| || ||||||||||| ||||| |||    
T  5443807 cccgaccatctttttgtaataaaaatgattcagagtttttaggaagagcttggtcatctctttctcctcaatacgtgggctgacttgggcagcggtgtct 5443906  T
Q  419 ct 420  Q
    ||    
T  5443907 ct 5443908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 242 - 420
Target Start/End: Original strand, 36379496 - 36379674
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  36379496 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 36379595  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  36379596 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 36379674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 242 - 420
Target Start/End: Original strand, 37004168 - 37004346
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | |||||| |    
T  37004168 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtagtaaa 37004267  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  37004268 aatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtctct 37004346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 420
Target Start/End: Complemental strand, 17953739 - 17953561
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||| | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  17953739 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctctgcgaagctctttggtgtactcccgaccatctttttgtaataaa 17953640  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  17953639 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 17953561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 420
Target Start/End: Original strand, 11947806 - 11948107
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  11947806 tgttgataggctggataagtttgttgaggccctccatgtgtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 11947905  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  11947906 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 11948005  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  11948006 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 11948105  T
Q  419 ct 420  Q
    ||    
T  11948106 ct 11948107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 420
Target Start/End: Complemental strand, 31517070 - 31516769
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  31517070 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 31516971  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  31516970 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 31516871  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  31516870 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 31516771  T
Q  419 ct 420  Q
    ||    
T  31516770 ct 31516769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 420
Target Start/End: Original strand, 15788247 - 15788425
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  15788247 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 15788346  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  15788347 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 15788425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 15788124 - 15788209
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 204  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  15788124 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 15788209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 36379373 - 36379458
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 204  Q
    ||||| |||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  36379373 tgttggtaggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 36379458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 204
Target Start/End: Original strand, 37004045 - 37004130
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttccc 204  Q
    ||||| |||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||    
T  37004045 tgttggtaggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttccc 37004130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 17953862 - 17953786
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaa 195  Q
    |||||||||||||||||| |||| |||||| | ||||| | |||||||||||| | ||| |||||||| || |||||    
T  17953862 tgttgataggctggataagtttgttgaggcattccatgagtcaccataccgacttcttgctctttcttcctcgggaa 17953786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 48 - 420
Target Start/End: Original strand, 2339796 - 2340168
Alignment:
Q  48 gatactgttggaactgcggctgataacctggttgttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgagg 147  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||| |||||    
T  2339796 gatactgttggaactgcggctgataacccggttgttgaatagcattggtagcgggcgtaatggcagcaacatgttgataagctggataattttgctgagg 2339895  T
Q  148 cctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaac 247  Q
    ||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||       ||||||||  | ||||||||||||||||||||     
T  2339896 cctcccatgggccaccataccgacctccggtgctttctttcttgggaagttgttcccaaatttcttagctccactgtcggaagctccatctttaactaat 2339995  T
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  2339996 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaaatgat 2340095  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||    
T  2340096 tgagagtttttaagaagatcttggtcatctccttctcttctatacgtgggctgacttgggcagcggtatctct 2340168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 6201487 - 6201656
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||| || || |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  6201487 cgtccttctcggactccttcttccaattgtacgcctataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 6201586  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    | || ||||||||||||| |||| ||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  6201587 taagggtttttaagaagagcttgatcatctctttctcttctacacgcgggatgacttgggcagcggtatc 6201656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 420
Target Start/End: Original strand, 5632524 - 5632825
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  5632524 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 5632623  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| ||  | ||| |||| ||  ||||    
T  5632624 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatttccgcgaagctctttggtgtact 5632723  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  5632724 cccgaccatctttttgtaataaaaatgatttagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtct 5632823  T
Q  419 ct 420  Q
    ||    
T  5632824 ct 5632825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 76 - 420
Target Start/End: Complemental strand, 2412325 - 2411981
Alignment:
Q  76 tggttgttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctat 175  Q
    |||| |||||||| |||||| |||  |||| |||| || ||| |||||||| | ||||||| | |||||||||||||||||||| |||||||  || | |    
T  2412325 tggtggttgaataacattggcagcaagtgtgatggcagcaacgtgttgataagttggataagtctgatgaggcctcccatgggctaccatactaacttct 2412226  T
Q  176 tgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaact 275  Q
    |||||||| ||||||||||| | ||||||| |       | |||||  | ||||| |||| | || ||||| ||||||||||| |||||| |||||||||    
T  2412225 tgttctttttttcttgggaaatggttcccatatttcttggttccacaggtagaagttccaccctttactaaacgtccttctcgcactccttcttccaact 2412126  T
Q  276 gtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcat 375  Q
    |||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||    
T  2412125 gtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgattgagagtttttaagaaaagcttggtcat 2412026  T
Q  376 ctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    ||  || ||||||||||| ||||| |||||||| |||||||||||    
T  2412025 ctttttttcttctatacgcggactaacttgggcagcggtatctct 2411981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 219 - 389
Target Start/End: Original strand, 20054609 - 20054779
Alignment:
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| ||||||| | ||||| ||||||| ||||||||||| |||||| ||||||||||||||||||| || ||||||||  |||||||||||||| ||||    
T  20054609 cactggcagaagtttcatctctaactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatctcagcaaagttcttgggcgtact 20054708  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 389  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||    
T  20054709 tccgaccatcttctcgtagtagaactgattgagagtttttaagaagagtttggtcatctctttctcttcta 20054779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 20044396 - 20044565
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  20044396 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 20044495  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  20044496 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 20044565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 619668 - 619837
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| |||| |||| ||||    
T  619668 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagcagaactgat 619767  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  619768 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 619837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 16821526 - 16821695
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  16821526 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 16821625  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    ||||||||||||||||||  |||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  16821626 tgagagtttttaagaagaggttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 16821695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 24147211 - 24147380
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  24147211 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 24147310  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| | | || ||||||||||| ||||||||    
T  24147311 tgagagtttttaagaagagcttggtcatttctttctcttctacatgcgggctgacttgggcagcggtatc 24147380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 27513705 - 27513536
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  27513705 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 27513606  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || ||||||||    
T  27513605 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatc 27513536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 76 - 420
Target Start/End: Original strand, 2410265 - 2410606
Alignment:
Q  76 tggttgttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctat 175  Q
    |||| |||||||| | |||| ||| ||||| || | || ||| |||||||| | ||||||| | || | ||||||||||||||| |||||||  || | |    
T  2410265 tggtggttgaataactttggcagcaggtgtgatagcagcaacgtgttgataagttggataagtctgctaaggcctcccatgggctaccatactaacttct 2410364  T
Q  176 tgttctttcttt-cttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaac 274  Q
    |||||||| ||| || | ||||| ||||||| |       | |||||| | |||||||||||| || ||||| ||||||| ||  | |||| ||||||||    
T  2410365 tgttcttttttttctcgagaagtggttcccatatttcttggttccactggtagaagctccatcctttactaaacgtccttttcagattccttcttccaac 2410464  T
Q  275 tgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtca 374  Q
    ||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||    | | |||||||||||||||| ||||||||||    
T  2410465 tgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagta----taactgagagtttttaagaaaatcttggtca 2410560  T
Q  375 tctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    |||| || ||||||||||| || || |||||||  || ||||||||    
T  2410561 tctctttttcttctatacgcgggctaacttgggtagcagtatctct 2410606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 420
Target Start/End: Original strand, 9139923 - 9140101
Alignment:
Q  242 actaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtaga 341  Q
    ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  |||| ||||||||||| | ||| || |    
T  9139923 actaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtactcccgaccatctttttgtaataaa 9140022  T
Q  342 attgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||||    
T  9140023 aatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtctct 9140101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 9139800 - 9139876
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaa 195  Q
    |||||||||||||||||| |||| |||||| | ||||| | |||||||||||| | ||| |||||||| || |||||    
T  9139800 tgttgataggctggataagtttgttgaggcattccatgagtcaccataccgacttcttgctctttcttcctcgggaa 9139876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 20054515 - 20054608
Alignment:
Q  71 taacctggttgttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccacca 164  Q
    ||||| || |||||||| ||| ||| ||||||||| |  |||| |||||||||||  || | ||| ||||| |||||||| |||||||||||||    
T  20054515 taacccggctgttgaatggcactggcagcgggtgtgactgtagcaacatgttgatgagccgaatatttttgttgaggccttccatgggccacca 20054608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 133 - 424
Target Start/End: Original strand, 5723 - 6014
Alignment:
Q  133 ataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagct 232  Q
    |||| |||| ||||| || |||||||||||||||| ||||| |||||||||||||||||||| || |||||| ||       | |||||| | ||||| |    
T  5723 ataagtttgctgaggtcttccatgggccaccatactgacctcttgttctttctttcttgggaggtggttcccgaatttcttggttccactggaagaagtt 5822  T
Q  233 ccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttct 332  Q
     |||| || ||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||  | ||||| |||||| ||||||||||||||||||    
T  5823 acatcctttactaaacgtccttctcggactccttcttccaactgtacacccataccaaccatctcagcgaagtttttgggcgtacttccgaccatcttct 5922  T
Q  333 cgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctcttcat 424  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||| |  ||||||||||| |||||||||||||||    
T  5923 cgtagtagaactgatttagagtttttaagaagagcttggtcatctctttctcttctatacgtgagctgacttgggcagcggtatctcttcat 6014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 176 - 408
Target Start/End: Original strand, 21763993 - 21764225
Alignment:
Q  176 tgttctttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaact 275  Q
    |||||||||||||||||||||| |||||||||       | |||||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||    
T  21763993 tgttctttctttcttgggaagtggttcccaaatttcttggttccactagcagaagctccatcttttactaaacgtccttctcggactccttcttccaact 21764092  T
Q  276 gtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcat 375  Q
    | |||||||| |||||||||||  | |||||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||  ||||||||    
T  21764093 gcacacccataccaaccatctcagcgaagttcttgggcgtacttccgaccatcttctcgtagtagaactgactaagagtttttaagaagagtttggtcat 21764192  T
Q  376 ctccttctcttctatacgaggactgacttgggc 408  Q
     ||||||||||||||||| || |||||||||||    
T  21764193 ttccttctcttctatacgcgggctgacttgggc 21764225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 119 - 420
Target Start/End: Complemental strand, 22946156 - 22945855
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || ||||| | ||||||          |  |    
T  22946156 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaaatggttcccggtcttcttggtcc 22946057  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || | |||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  22946056 cactggcaggagttgcattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 22945957  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  22945956 cccgaccatctttttgtaataaaaatgattcagagtttttaggaagagcttggtcatctctttctcctcaatgcgtgggctgacttgggcagcggtgtct 22945857  T
Q  419 ct 420  Q
    ||    
T  22945856 ct 22945855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 420
Target Start/End: Complemental strand, 12380421 - 12380120
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  12380421 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 12380322  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  12380321 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 12380222  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  12380221 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 12380122  T
Q  419 ct 420  Q
    ||    
T  12380121 ct 12380120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 41437063 - 41436774
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||| ||||||| |||| |||||||| || ||||||||||||| |||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  41437063 tgttgataggttggataagtttgctgaggccttccttgggccaccatactgacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 41436964  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||||    
T  41436963 cactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtact 41436864  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  41436863 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 41436774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 119 - 408
Target Start/End: Complemental strand, 20439898 - 20439609
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||| ||||||| |||| |||||||| || |||||||||||||  ||||  |||||||||||||| |||| || ||| ||| |       | ||    
T  20439898 tgttgataggttggataagtttgctgaggccttccttgggccaccatactaacctcatgttctttctttctcgggatgtggttgccatatttcttggttc 20439799  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| | |||| |||||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||||||||| ||  ||||||| |||||| ||||    
T  20439798 cactggtagaaactccatcttttactaaacgtccttctcggactccttcttccaactgcacacccatgccaaccatttcagcaaagtttttgggcgtact 20439699  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  20439698 tccgaccatcttctcgtagtagaactgactgagagtttttaagaaaagtttggtcatttccttctcttctatacgtgggctgacttgggc 20439609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 120 - 420
Target Start/End: Original strand, 15596422 - 15596722
Alignment:
Q  120 gttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctcc 219  Q
    ||||||||  ||||||| |||| ||||  || ||||| |||||||||||||| | |||||||||||||||||||| ||   |||| ||       | |||    
T  15596422 gttgatagattggataagtttgttgagatcttccatgagccaccataccgacttcttgttctttctttcttgggaggtgactcccgaatttcttggttcc 15596521  T
Q  220 actagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatactt 319  Q
    ||| ||||||| | ||||||| ||||| ||||||| ||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| |||||    
T  15596522 actggcagaagttgcatcttttactaaacgtccttgtcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtactt 15596621  T
Q  320 ccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctc 419  Q
    || |||||| | |||||||||||    ||||||||||||||||||| ||||||||||||||| || |||||||| ||  |||||||||| ||||||||||    
T  15596622 ccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagcttggtcatctccttttcctctatacgcgggttgacttgggcagcggtatctc 15596721  T
Q  420 t 420  Q
    |    
T  15596722 t 15596722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 6198159 - 6197990
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  6198159 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 6198060  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  6198059 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 6197990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 8808075 - 8807906
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  8808075 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 8807976  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  8807975 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 8807906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 15533637 - 15533806
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  15533637 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 15533736  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  15533737 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 15533806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 21611505 - 21611336
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| || ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  21611505 cgtccttctcggaccccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 21611406  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  21611405 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 21611336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 46397011 - 46397180
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  46397011 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 46397110  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  46397111 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 46397180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 81 - 420
Target Start/End: Complemental strand, 15915338 - 15914999
Alignment:
Q  81 gttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttc 180  Q
    ||||||||| || ||| |||||||| || | || |||  ||||||||  ||||||| |||| ||||| || ||||| |||||||||| ||| | ||||||    
T  15915338 gttgaatagtatgggtggcgggtgtgatagcagcaacgggttgatagattggataagtttgttgaggtcttccatgagccaccatactgacttcttgttc 15915239  T
Q  181 tttctttcttgggaagttgttcccaaannnnnnngctccactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtaca 280  Q
    |||||||||||||| ||   |||| ||       | |||||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||    
T  15915238 tttctttcttgggaggtgactcccgaatttcttggttccactggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcaca 15915139  T
Q  281 cccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctcct 380  Q
    ||||| |||||||||||  |||||||||||||| ||||||| |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||    
T  15915138 cccataccaaccatctcagcaaagttcttgggcgtacttccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctcct 15915039  T
Q  381 tctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | || |||||||  ||  |||||||||| | |||||||||    
T  15915038 tttcctctatacacgggttgacttgggcagtggtatctct 15914999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 8620200 - 8620030
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  8620200 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 8620101  T
Q  348 tgagagt-ttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    ||||||| ||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  8620100 tgagagttttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 8620030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 420
Target Start/End: Complemental strand, 46377036 - 46376735
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  46377036 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 46376937  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  46376936 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 46376837  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| |||||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  46376836 cccgaccatctttttgtaataaaaatgatttagagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 46376737  T
Q  419 ct 420  Q
    ||    
T  46376736 ct 46376735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 420
Target Start/End: Original strand, 5954354 - 5954655
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  5954354 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 5954453  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| ||||| || ||||| |||||||||||  | ||| |||| ||  ||||    
T  5954454 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactggactcccataccaaccatctccgcgaagctctttggtgtact 5954553  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  5954554 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 5954653  T
Q  419 ct 420  Q
    ||    
T  5954654 ct 5954655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 219 - 420
Target Start/End: Original strand, 17294 - 17495
Alignment:
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| ||||||| ||||||| | ||||| ||||||||||| |||||| ||||||||||||||||||| || ||||| ||| |||||||||||||| || |    
T  17294 cactggcagaagttccatctctgactaaacgtccttctcggactccttcttccaactgtacacccataccgaccatttctgcaaagttcttgggcgtatt 17393  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||| |||||| || ||||||    
T  17394 tccgaccatcttctcgtagtagaactgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgatttgggcagcagtatct 17493  T
Q  419 ct 420  Q
    ||    
T  17494 ct 17495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 17200 - 17290
Alignment:
Q  71 taacctggttgttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctcccatgggcca 161  Q
    ||||||||||||||||| ||||||||||||||||| |  | || ||| |||||||| || | ||| ||||| |||||||||||||| ||||    
T  17200 taacctggttgttgaatggcattggtagcgggtgtgactgcagcaacgtgttgataagccgaatatttttgttgaggcctcccatgcgcca 17290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 9879 - 10048
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  9879 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttctgaccatcttctcgtagtagaactgat 9978  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  9979 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 10048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 305 - 417
Target Start/End: Original strand, 3822 - 3934
Alignment:
Q  305 ttcttgggcatacttccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgactt 404  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||    
T  3822 ttcttgggcgtacttctgaccatcttctcgtagtagaactgattgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgactt 3921  T
Q  405 gggccgcggtatc 417  Q
    |||| ||||||||    
T  3922 gggcagcggtatc 3934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 219 - 408
Target Start/End: Complemental strand, 32017 - 31828
Alignment:
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| ||||||| ||||||| ||||||| ||||||||||| | |||| ||||||||||||| ||||| |  ||||| ||| |||||||||||||| ||||    
T  32017 cactggcagaagttccatctctaactaaacgtccttctcggattccttcttccaactgtacgcccatactgaccatttctgcaaagttcttgggcgtact 31918  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  31917 tccgaccatcctctcgtagtagaattgatcaagagtttttaagaagagtttggtcatctccttctcttctatacgcgggctgacttgggc 31828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 32130 - 32018
Alignment:
Q  52 ctgttggaactgcggctgataacctggttgttgaatagcattggtagcgggtgtaatggtagaaacatgttgataggctggataattttgatgaggcctc 151  Q
    ||||||||  || ||||||||||| || |||||||| ||||||| ||||||||| || | || ||| |||||||  || | ||| ||||| ||||||||     
T  32130 ctgttggagttgtggctgataacccggctgttgaatggcattggcagcgggtgtgattgcagcaacgtgttgatgagccgaatatttttgttgaggcctt 32031  T
Q  152 ccatgggccacca 164  Q
    |||||||||||||    
T  32030 ccatgggccacca 32018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 248 - 420
Target Start/End: Original strand, 12431 - 12603
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  12431 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 12530  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctct 420  Q
    | |||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||| |||||||    
T  12531 taagagtttttaagaagagcttggtcatatctttctcttctacacgcgggctgacttgggcagcgatatctct 12603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 248 - 408
Target Start/End: Original strand, 15575638 - 15575798
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  15575638 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagtagaactgat 15575737  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggc 408  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||||||    
T  15575738 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggc 15575798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 16724575 - 16724753
Alignment:
Q  239 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 338  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  16724575 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtacttccgaccatcttctcgtagt 16724674  T
Q  339 agaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||| ||  ||  |||||||||| ||||||||    
T  16724675 agaactgattgagagtttttaagaagagcttggtcatctctttctcttctacactcgggatgacttgggcagcggtatc 16724753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 14921108 - 14920939
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||||||||||||||||||||||||| ||||    
T  14921108 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgcacttccgaccatcttctcgtagtagaactgat 14921009  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  14921008 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 14920939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 15899271 - 15899440
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||  ||||    
T  15899271 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagatctgat 15899370  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    ||||||||||||| |||| |||||||||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  15899371 tgagagtttttaaaaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcggtatc 15899440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 18040019 - 18039850
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||    
T  18040019 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgaccatcttctcgtagtagaactgat 18039920  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    | |||||||||||||||| |||||||||||| |||||||||| ||| ||  ||||||| || ||||||||    
T  18039919 taagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgagcagcggtatc 18039850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 15571510 - 15571679
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||||||||| ||||| |||||||||||  |||||||||||||   ||||| ||||||||||||||||||||| ||||    
T  15571510 cgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggagaacttcagaccatcttctcgtagtagaactgat 15571609  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||| ||  |||||||||| ||| ||||    
T  15571610 tgagagtttttaagaagagcttggtcatctctttctcttctacacgcgggatgacttgggcagcgatatc 15571679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 417
Target Start/End: Complemental strand, 22707709 - 22707540
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |  ||| ||||||||||||||||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||||||| ||||    
T  22707709 cgtccttctcggatcccttcttccaactgtacacccataccaaccatctcagcaaaattcttgggcgtacttccgaccatcttcttgtagtagaactgat 22707610  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| ||  |||||||||| ||||||||    
T  22707609 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggatgacttgggcagcggtatc 22707540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 248 - 417
Target Start/End: Original strand, 21479703 - 21479872
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    ||||||||||| |||||| ||||||| ||||||||||| |||||||||||  |||||||||||||| | |||||||||||||||| ||||||||| ||||    
T  21479703 cgtccttctcggactccttcttccaattgtacacccataccaaccatctcagcaaagttcttgggcgtgcttccgaccatcttcttgtagtagaactgat 21479802  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
    |||||||||||||||||| ||||||||| || |||||||||| ||| || ||||||||||| ||||||||    
T  21479803 tgagagtttttaagaagagcttggtcatttctttctcttctacacgcgggctgacttgggcagcggtatc 21479872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 120 - 420
Target Start/End: Original strand, 38771 - 39071
Alignment:
Q  120 gttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctcc 219  Q
    ||||||||  ||||||| |||| ||||| || ||||| |||||||||| ||| | |||||||||||||||||||| ||   |||| ||       | |||    
T  38771 gttgatagattggataagtttgttgaggtcttccatgagccaccatactgacttcttgttctttctttcttgggaggtgactcccgaatttcttggttcc 38870  T
Q  220 actagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatactt 319  Q
    ||| ||||||| | ||||||| ||||| ||||||||||| || ||| |||||||||| |||||||| |||||||||||  |||||||||||||| |||||    
T  38871 actggcagaagttgcatcttttactaaacgtccttctcggaccccttcttccaactgcacacccataccaaccatctcagcaaagttcttgggcgtactt 38970  T
Q  320 ccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatctc 419  Q
    || |||||| | |||||||||||    |||||||||||||||||||  |||||||||||||| || |||||||| ||  |||||||||| | ||||||||    
T  38971 ccaaccatcctttcgtagtagaaagagttgagagtttttaagaagagtttggtcatctccttttcctctatacgcgggttgacttgggcagtggtatctc 39070  T
Q  420 t 420  Q
    |    
T  39071 t 39071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 245 - 389
Target Start/End: Complemental strand, 2287 - 2143
Alignment:
Q  245 aaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaatt 344  Q
    |||||||||||||| |||||| ||||||||||||| ||||| |||||||||||  ||||||||| |||| |||||||||||||||||||||||||||| |    
T  2287 aaccgtccttctcggactccttcttccaactgtacgcccataccaaccatctcagcaaagttctagggcgtacttccgaccatcttctcgtagtagaact 2188  T
Q  345 gattgagagtttttaagaagatcttggtcatctccttctcttcta 389  Q
    ||||||||||||||||||||| |||||||||||| || |||||||    
T  2187 gattgagagtttttaagaagagcttggtcatctctttttcttcta 2143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 239 - 389
Target Start/End: Complemental strand, 74936 - 74786
Alignment:
Q  239 ttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagt 338  Q
    ||||| || ||||||||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||||||||||| |||| |||||||||||||||||||    
T  74936 ttaaccaatcgtccttctcggactccttcttccaattgtacgcccataccaaccatctcagcaaagttcttgggcgtactgccgaccatcttctcgtagt 74837  T
Q  339 agaattgattgagagtttttaagaagatcttggtcatctccttctcttcta 389  Q
    |||| |||||||||||||||||||||| |||||||||||| ||||||||||    
T  74836 agaactgattgagagtttttaagaagagcttggtcatctctttctcttcta 74786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 119 - 420
Target Start/End: Complemental strand, 25924 - 25623
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||| ||||| | |||||||||||| | ||| |||||||| || ||||| |  |||||          |  |    
T  25924 tgttgataggctggataagtttgttgaggccttccatgagtcaccataccgacttcttgctctttcttcctcgggaaatgattcccggtcttcttggtcc 25825  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || | |||| || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  25824 cactggcaggagttgcatcctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 25725  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  25724 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 25625  T
Q  419 ct 420  Q
    ||    
T  25624 ct 25623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 389
Target Start/End: Complemental strand, 10795 - 10654
Alignment:
Q  248 cgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatacttccgaccatcttctcgtagtagaattgat 347  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||||||||  |||||||||||||  |||||||| ||||||||||||||||||| ||||    
T  10795 cgtctttctcgtactccttcttccaactgtacgcccataccaaccatctcagcaaagttcttgggtgtacttccgtccatcttctcgtagtagaactgat 10696  T
Q  348 tgagagtttttaagaagatcttggtcatctccttctcttcta 389  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  10695 tgagagtttttaagaagagcttggtcatctctttctcttcta 10654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 219 - 386
Target Start/End: Original strand, 28843 - 29010
Alignment:
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| ||||||| || |||| ||||||| ||||||||||| ||||||  ||||||||||||  |||| |||||||||||  |||||||||||||| ||||    
T  28843 cactggcagaagttctatctctaactaaacgtccttctcggactcctttttccaactgtacgtccataccaaccatctcagcaaagttcttgggcgtact 28942  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctctt 386  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||| |||||||    
T  28943 tccgaccatcttctcgtagtagaactgattgagggtttttaagaagagtttggtcatctctttctctt 29010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 119 - 420
Target Start/End: Complemental strand, 302667 - 302366
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || ||||| | ||||||          |  |    
T  302667 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcgggaaatggttcccggtcttcttggtcc 302568  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  302567 cactggcaggagttgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 302468  T
Q  319 tccgaccatcttctcgtagtagaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatct 418  Q
     ||||||||||| | ||| || || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| |||    
T  302467 cccgaccatctttttgtaataaaaatgattcaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtct 302368  T
Q  419 ct 420  Q
    ||    
T  302367 ct 302366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 420
Target Start/End: Complemental strand, 9742 - 9440
Alignment:
Q  119 tgttgataggctggataattttgatgaggcctcccatgggccaccataccgacctattgttctttctttcttgggaagttgttcccaaannnnnnngctc 218  Q
    |||||||||||||||||| |||| |||||||  ||||| | |||||||||||| | |||||||||||| || || || | ||||||          |  |    
T  9742 tgttgataggctggataagtttgttgaggccctccatgagtcaccataccgacttcttgttctttcttcctcggaaaatggttcccggtcttcttggtcc 9643  T
Q  219 cactagcagaagctccatctttaactaaccgtccttctcgtactcctccttccaactgtacacccatgccaaccatctctccaaagttcttgggcatact 318  Q
    |||| |||| || |  ||  || ||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||||||  | ||| |||| ||  ||||    
T  9642 cactggcaggaggtgtattctttactaagcgtccttctcggactccttcttctaactgtactcccataccaaccatctccgcgaagctctttggtgtact 9543  T
Q  319 tccgaccatcttctcgtagt-agaattgattgagagtttttaagaagatcttggtcatctccttctcttctatacgaggactgacttgggccgcggtatc 417  Q
     || |||||||| | ||| | | || ||||| | |||||||| ||||| |||||||||||| ||||| || || || || ||||||||||| ||||| ||    
T  9542 cccaaccatctttttgtaataaaaaatgatttaaagtttttaggaagagcttggtcatctctttctcctcaattcgtgggctgacttgggcagcggtgtc 9443  T
Q  418 tct 420  Q
    |||    
T  9442 tct 9440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University