View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_407 (Length: 247)
Name: NF10954A_low_407
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_407 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 30091137 - 30090947
Alignment:
| Q |
19 |
cagcaagcattaagtttcaacaaacagttctaggaataaaaccggcaccaattgcagctcattactcatcaagaggtccatcacatggctttccatgaat |
118 |
Q |
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| T |
30091137 |
cagcaagcattaagtttcaacaaacatttcttggaataaaaccggcaccaattgcagctcattactcatcaagaggtccatcacatggctttccttggat |
30091038 |
T |
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| Q |
119 |
tttgaagcctgacataatggcacctggatcaagagttctcgctgcttttgttccttataaaccaacagctagaattggtaccgatgtgttc |
209 |
Q |
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| T |
30091037 |
tttgaagcctgacataatggcacctggatcaagagttctcgctgcttttgttccttataaaccaacagctagaattggtaccgatgtgttc |
30090947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 30099782 - 30099969
Alignment:
| Q |
22 |
caagcattaagtttcaacaaacagttctaggaataaaaccggcaccaattgcagctcattactcatcaagaggtccatcacatggctttccatgaatttt |
121 |
Q |
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||||||| || |||||||||||| || |||||| ||| ||||||||| |||||| ||||||||||||||||||| |||||| ||| |||||| ||||| |
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| T |
30099782 |
caagcatcaaatttcaacaaacatttgtaggaacaaagccggcaccagctgcagcatattactcatcaagaggtccttcacatagctatccatggatttt |
30099881 |
T |
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| Q |
122 |
gaagcctgacataatggcacctggatcaagagttctcgctgcttttgttccttataaaccaacagctagaattggtaccgatgtgttc |
209 |
Q |
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||| ||||| |||||||||||||||||||||||||| || |||| | ||||| | |||||||||||||||||||| || |||||||| |
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| T |
30099882 |
gaaacctgatataatggcacctggatcaagagttcttgcagcttatattcctaacaaaccaacagctagaattggcacaaatgtgttc |
30099969 |
T |
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