View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_408 (Length: 247)
Name: NF10954A_low_408
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_408 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 22608709 - 22608479
Alignment:
| Q |
2 |
catcaaccacaccggtaataccacacttcttttcttttaagaaatacaagtttttggtcaagcagagaaaaatatatcaaaacctatcaagagtccaatg |
101 |
Q |
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| T |
22608709 |
catcaaacacaccggtaataccacactt---ttcttttaagaaatacaagtttttggtcaagcagagaaaaatatatcaaaacctatcaagagtccaatg |
22608613 |
T |
|
| Q |
102 |
tccgatttaaaactgatatctgacccgaatccccatttaacaagaaaacttctagaggaacataaggagaagacattgatgcaccaaacctataggaggg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22608612 |
tccgatttaaaactgatatctgacccgaatccccatttaacaagaaaacttctagaggaacataaggagaagacattgatgcaccaaacctataggaggg |
22608513 |
T |
|
| Q |
202 |
ttgcaacattttgctgccttttgcacaagatatt |
235 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
22608512 |
ttgcaacattttgctgccttttgcacaagatatt |
22608479 |
T |
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