View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_409 (Length: 247)
Name: NF10954A_low_409
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_409 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 4650382 - 4650160
Alignment:
| Q |
16 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
115 |
Q |
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| T |
4650382 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
4650283 |
T |
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| Q |
116 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattactggaaacagtg |
215 |
Q |
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| T |
4650282 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtg |
4650183 |
T |
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| Q |
216 |
gagaccaatggagtgatattctt |
238 |
Q |
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| T |
4650182 |
gagaccaatggagtgatattctt |
4650160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 23681988 - 23682096
Alignment:
| Q |
130 |
atatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattactggaaacagtggagaccaatggagt |
229 |
Q |
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| T |
23681988 |
atatcatggtaaaatagcatttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaatagtggagaccaatggagt |
23682087 |
T |
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| Q |
230 |
gatattctt |
238 |
Q |
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| T |
23682088 |
gatattctt |
23682096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 238
Target Start/End: Complemental strand, 4645975 - 4645866
Alignment:
| Q |
129 |
tatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattactggaaacagtggagaccaatggag |
228 |
Q |
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| T |
4645975 |
tatatcatggtaaaacagcagttacatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattggagatcaatggag |
4645876 |
T |
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| Q |
229 |
tgatattctt |
238 |
Q |
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| T |
4645875 |
tgatattctt |
4645866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 194
Target Start/End: Complemental strand, 41872375 - 41872282
Alignment:
| Q |
101 |
caaatttatggttgcagggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggat |
194 |
Q |
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| T |
41872375 |
caaatttgtggtctcagggatacatcaatatatcatggtaaaacagcagttacatacaaatcgtcagagagaaagaagctggaggaagaaggat |
41872282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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