View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_410 (Length: 247)
Name: NF10954A_low_410
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_410 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 34092365 - 34092599
Alignment:
| Q |
14 |
atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttcta-tttttctaccaaaaattatttaatacaaggtt |
112 |
Q |
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| T |
34092365 |
atggacatcacatcatatacaatctcctttgaaaacaaatcacatcatatacagactaagttttctattttttctaccaaaaattatttaatacaaggtt |
34092464 |
T |
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| Q |
113 |
aatcaaaatatttatttcatctttaacataacatcgnnnnnnnaaaatatctttcaaatttaattaaaacatcaatattggttttnnnnnnntctttaac |
212 |
Q |
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| T |
34092465 |
aatcaaaatatttatttaatctttaacataacatcgtttttttaaaatatctttcaaatttaattaaaacatcaaaattggttttaaaaaaatctttaac |
34092564 |
T |
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| Q |
213 |
aagcctacaataaaagattttttaaattaattata |
247 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34092565 |
aagcctacaataaaagattttttaaattaattata |
34092599 |
T |
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