View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_411 (Length: 247)
Name: NF10954A_low_411
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_411 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 1841558 - 1841338
Alignment:
| Q |
16 |
atcaaccacaagaacaagaacaagaacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttgataattc |
115 |
Q |
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| T |
1841558 |
atcaaccacaagaacaagaacaagaacatggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttgataattc |
1841459 |
T |
|
| Q |
116 |
aactatgataccagctacacctaattataagaataataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaatagagtgaag |
215 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1841458 |
aactatgataccagctacacctaattataaga---ataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaaatggagtgaag |
1841362 |
T |
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| Q |
216 |
agaggtagaagcagttcacagtgt |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
1841361 |
agaggtagaagcagttcacagtgt |
1841338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 1824258 - 1824138
Alignment:
| Q |
16 |
atcaaccacaagaacaagaacaagaacaaggtttgaaatcgaaaaaggttcctcggagaagttcttctccaaagacatatattttgtcttttgataattc |
115 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1824258 |
atcaaccacaagaacaagaacaacaacatggtttgaaatcgaaaaaggttcctcgtaaaagttcttctccaaagacatatattttgtcttttgataattc |
1824159 |
T |
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| Q |
116 |
aactatgataccagctacacc |
136 |
Q |
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||||||||||||||||||||| |
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| T |
1824158 |
aactatgataccagctacacc |
1824138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 1824109 - 1824021
Alignment:
| Q |
150 |
aataaacgtagccatgaaagtaatcaaaagagtgaaatgaaaataaatcaacaaa---atagagtgaagagaggtagaagcagttcaca |
235 |
Q |
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||||||||||||| |||||||| |||||| |||| |||||| |||||||||| || ||||||||| |||||||||||||||||| |
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| T |
1824109 |
aataaacgtagccgtgaaagtactcaaaaagctgaagtgaaaactaatcaacaaatcaatggagtgaagaaaggtagaagcagttcaca |
1824021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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