View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_412 (Length: 246)
Name: NF10954A_low_412
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_412 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 18446347 - 18446574
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18446347 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacaattcaacttaatgcttaaaa |
18446446 |
T |
|
| Q |
109 |
tgaccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18446447 |
tgaccatagagagttccaagtgaagagaagatgtatagggattgacagaatcatatcacacaaagcctcatcgcacagattgagcaacttacgtcattac |
18446546 |
T |
|
| Q |
209 |
aaaagtcctcttcctctgcctattcatt |
236 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
18446547 |
aaaagtcctcttcctctgcctattcatt |
18446574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 36404125 - 36404339
Alignment:
| Q |
23 |
tcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaatgaccatagagagt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
36404125 |
tcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatactgttcaacttaatgcttaaaatgaccatagggagt |
36404224 |
T |
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| Q |
123 |
tccaagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcattacaaaagtcctcttc |
221 |
Q |
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|||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36404225 |
tccaagtggagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcatagattgagcaacttacgtcattacaaaagtcctcttc |
36404324 |
T |
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| Q |
222 |
ctctgcctattcatt |
236 |
Q |
| |
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||||||||||||||| |
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| T |
36404325 |
ctctgcctattcatt |
36404339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 18578900 - 18578863
Alignment:
| Q |
13 |
acatcaattttcaccattcacaaataaatatgcactcc |
50 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
18578900 |
acatcaattttcaccattcacaaataaatatgtactcc |
18578863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 55353517 - 55353289
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55353517 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataatttttttaccaaatacagttcaacttaatgcttaaaa |
55353418 |
T |
|
| Q |
109 |
tgaccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacac-aaagcctcatcgcacagattgagcaacttacgtcatta |
207 |
Q |
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||||||||| ||||| ||| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
55353417 |
tgaccatagggagtttcaaatgaagagaagatgtatagggattgacagaatcatatcacacaaaagcctcatcgcacagattgagcaacttacgtcatta |
55353318 |
T |
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| Q |
208 |
caaaagtcctcttcctctgcctattcatt |
236 |
Q |
| |
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|||||||| |||||||||||||||||||| |
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| T |
55353317 |
caaaagtcttcttcctctgcctattcatt |
55353289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 29607414 - 29607644
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaataaatatgcactccctccggtcttgaacaatataaattttttaccaaatacagttcaacttaatgcttaaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||| | ||||||||||||||||| ||||||||| |
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| T |
29607414 |
atggacatcaattttcaccattcacaaaataatatttactcccttgggtcttgaataatataaatttttgagcaaatacagttcaacttt-tgcttaaaa |
29607512 |
T |
|
| Q |
109 |
---tgaccatagagagttccaagtgaagagaagatgtatagggattgacatattcatatcacacaaa-gcctcatcgcacagattgagcaacttacgtca |
204 |
Q |
| |
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|||||| || ||||||||||||| ||| ||||||||||||||||||| | |||||||| ||||| | | ||||| | |||||||||||||||||| |
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| T |
29607513 |
aattgaccacagggagttccaagtgatgagcagatgtatagggattgacagaatcatatcaaacaaaagtcgtatcgcttaaattgagcaacttacgtca |
29607612 |
T |
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| Q |
205 |
ttacaaaagtcctcttcctctgcctattcatt |
236 |
Q |
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|||||| ||||||||||||||| | ||||||| |
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| T |
29607613 |
ttacaacagtcctcttcctctgtccattcatt |
29607644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14906158 - 14906121
Alignment:
| Q |
13 |
acatcaattttcaccattcacaaataaatatgcactcc |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
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|
| T |
14906158 |
acatcaattttcaccattcacaaataaatatgtactcc |
14906121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 13674233 - 13674274
Alignment:
| Q |
9 |
atggacatcaattttcaccattcacaaataaatatgcactcc |
50 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13674233 |
atggacatcaattttcaccattcacaaataaatatgtactcc |
13674274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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