View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_415 (Length: 246)
Name: NF10954A_low_415
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_415 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0078 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 26992628 - 26992376
Alignment:
| Q |
1 |
gaatgctctcttattttattcagttgcaaatactagccttacaaagaaagaaaataaactaagtcactccactaacacaaacgtggaatgtggagaaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992628 |
gaatgctctcttattttattcagttgcaaatactagccttacaaagaaagaaaataaactaagtcactccactaacacaaacgtggaatgtggagaaaac |
26992529 |
T |
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| Q |
101 |
taaccaagtcccagtaataagtc-------gtagagactattgaccaaaagatagaaacaaatactaataaatatgacagccagcaaagcaacagtattg |
193 |
Q |
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| T |
26992528 |
taaccaagtcccagtaataagtcttaagaagtagggactattgaccaaaagatagaaacaaatactaataaatatgagagccagcaaagcaacagtattg |
26992429 |
T |
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| Q |
194 |
tcattnnnnnnnnnnnncatataagtttgaatttttctaattacaccccatat |
246 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26992428 |
tcattaaaaaataaaaacatataagtttgaatttttctaattacaccccatat |
26992376 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 4832399 - 4832334
Alignment:
| Q |
58 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
123 |
Q |
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| T |
4832399 |
actaactcagtccactaacaaaaacgtggaatgtggagaaaactaactaagtcccactaataagtc |
4832334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 1751391 - 1751456
Alignment:
| Q |
58 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
123 |
Q |
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| T |
1751391 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactaactaagtcccactaataagtc |
1751456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 45000058 - 45000181
Alignment:
| Q |
58 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc-------gtagagactattgaccaaaagatagaa |
150 |
Q |
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| T |
45000058 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactaactaagtcccactaataaatcctaagaagtagggattattaacttaaagatagaa |
45000157 |
T |
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| Q |
151 |
acaaatactaataaatatgacagc |
174 |
Q |
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||| |||||||||| ||||||||| |
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| T |
45000158 |
acagatactaataactatgacagc |
45000181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 1755750 - 1755809
Alignment:
| Q |
61 |
aagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataa |
120 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||| |||||||| |||||| |
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| T |
1755750 |
aagttactccactaacaaaaacgtggaatgtggagaaaactaattaagtcccactaataa |
1755809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 19351 - 19286
Alignment:
| Q |
58 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
123 |
Q |
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| T |
19351 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactcactaagtcccactaataagtc |
19286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 19387 - 19346
Alignment:
| Q |
35 |
agccttacaaagaaagaaaataaactaagtcactccactaac |
76 |
Q |
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| T |
19387 |
agccttacaaagaaagaaaataaattaagttactccactaac |
19346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 37254071 - 37254006
Alignment:
| Q |
58 |
actaagtcactccactaacacaaacgtggaatgtggagaaaactaaccaagtcccagtaataagtc |
123 |
Q |
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| T |
37254071 |
actaactcagtccactaacagaaacgtggaatgtggagaaaactcactaagtcccactaataagtc |
37254006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 37254107 - 37254066
Alignment:
| Q |
35 |
agccttacaaagaaagaaaataaactaagtcactccactaac |
76 |
Q |
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| T |
37254107 |
agccttacaaagaaagaaaataaattaagttactccactaac |
37254066 |
T |
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