View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_416 (Length: 246)
Name: NF10954A_low_416
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_416 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 7650304 - 7650515
Alignment:
| Q |
27 |
aagtattgtgccacatttgctgtgtccaaataacacgaaagtttgttagattgtgtattagaaagcttctcatagaatctcagtcaaaccaaaagttaac |
126 |
Q |
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| T |
7650304 |
aagtattgtgccccattttgtgggtccaaataacacgaaagtttgttagattgtgtattagaaagcttctcatagaatatcagtcaaaccaaaagttaac |
7650403 |
T |
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| Q |
127 |
atgccacatggcatagttaaaatagggtgttagaaaagatagaagtctctgaagacacccatggttgccaaata-ccccctaatatactttccccttttt |
225 |
Q |
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| T |
7650404 |
atgccacatggcatagttaaaatagggtgttagaaaagatagaagtctctgaagacacccatggttgccaaatacccccctgatatactttccccttttt |
7650503 |
T |
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| Q |
226 |
gttcatattctt |
237 |
Q |
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|||||||||||| |
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| T |
7650504 |
gttcatattctt |
7650515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 7654530 - 7654608
Alignment:
| Q |
55 |
aataacacgaaagtttgttagattgtgtattagaaagcttctcatagaatctcagtcaaaccaaaagtt-aacatgcca |
132 |
Q |
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|||||||||||| ||||||| ||||||| |||||||| ||||||||||| || || | || |||||||| ||||||||| |
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| T |
7654530 |
aataacacgaaaatttgttacattgtgtgttagaaagattctcatagaaacttagccgaaacaaaagttgaacatgcca |
7654608 |
T |
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