View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_417 (Length: 246)
Name: NF10954A_low_417
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_417 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 30336236 - 30336464
Alignment:
| Q |
8 |
gaacaatatgcatctgaagcttatatattaccttactgcatttacatgtcttgctatggccataatgtatttacaattgaagtagaactaggaagtatat |
107 |
Q |
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| T |
30336236 |
gaacaatatgcatctgaagcttatatattaccttactgcatttacatgtcttgctatggccataatgtatttacaattgaagtagaactaggaagtatat |
30336335 |
T |
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| Q |
108 |
aatatctaatgcactggggaatttctttttgttttcttcttttgcagcggaaaagagggagggttgaatcaagatggggattatattttatccaatccat |
207 |
Q |
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| T |
30336336 |
aatatctaatgcactggggaatttctttttgttttcttcttttgcagcggaaaagagggagggttgaatcaagatggagattatattttatccaatccat |
30336435 |
T |
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| Q |
208 |
atcatctggtattgcatctttcttgatgt |
236 |
Q |
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| T |
30336436 |
atcatctggtattgcatctttcttgatgt |
30336464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 236
Target Start/End: Complemental strand, 33020416 - 33020227
Alignment:
| Q |
39 |
cttactgcatttacatgtcttgct---atggccataatgtatttacaattgaagtagaactaggaagtatataatatctaatgcactggggaatttcttt |
135 |
Q |
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| T |
33020416 |
cttattgcatttacatgttttgctccgatagtcataatctattgacaattgaagtagtaataggaagtatataatatctaatatactggggaatttcttt |
33020317 |
T |
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| Q |
136 |
ttgttttcttcttttgcagcggaaaagagggagggttgaatcaagatggggattatattttatccaatccatatcatctggtattgcatctttcttgatg |
235 |
Q |
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| T |
33020316 |
ttgttt--tttttttgtagtggaaaa-agggagtgtt--------atggagattatattttatcaaatttgcatcatctggtattgcatctttcttgatg |
33020228 |
T |
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