View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_418 (Length: 246)
Name: NF10954A_low_418
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_418 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 20816523 - 20816291
Alignment:
| Q |
11 |
ccaattcagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctc |
110 |
Q |
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| T |
20816523 |
ccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctc |
20816424 |
T |
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| Q |
111 |
tctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816423 |
tctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccc |
20816324 |
T |
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| Q |
211 |
cgaattgaaacttcattggatattcttcgacat |
243 |
Q |
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||||||| |||||||||||||||| | |||||| |
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| T |
20816323 |
cgaattgcaacttcattggatattttgcgacat |
20816291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 38779628 - 38779821
Alignment:
| Q |
17 |
cagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaac |
116 |
Q |
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|||| |||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||| |
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| T |
38779628 |
caggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctccttaac |
38779727 |
T |
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| Q |
117 |
tggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccc |
210 |
Q |
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| T |
38779728 |
tggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtccccc |
38779821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 33388587 - 33388771
Alignment:
| Q |
17 |
cagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaac |
116 |
Q |
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||||||||| |||||| ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||| |
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| T |
33388587 |
cagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaac |
33388686 |
T |
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| Q |
117 |
tggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
201 |
Q |
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|||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||||||||||||| |
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| T |
33388687 |
tggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccacc |
33388771 |
T |
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