View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_422 (Length: 246)
Name: NF10954A_low_422
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_422 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 32669507 - 32669732
Alignment:
| Q |
18 |
attcgtagctacataat-----ggctagc-tgatagagaatcttcctcatgattttatcatcatgttgttatgagataaacagaattgttgactatcaat |
111 |
Q |
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| T |
32669507 |
attcgtagctacataatagaaaggctagcgtgatagagaatcttcctcataattttatcatcatgttgttatgagatatacagaattgttgactatcaat |
32669606 |
T |
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| Q |
112 |
gaatttattaggtgggtgaagtccgtatcaatttaaactttttgtaaacggtgtcatcgtgattgtatcttaaaatcctcgtctgtttcattccggatta |
211 |
Q |
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| T |
32669607 |
gaatttattacgtgggtgaagtccgtatcaatttagactttttgtaaacagtgccatcgtggttgtatcttaaaatcctcgtctgtttcattccggatta |
32669706 |
T |
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| Q |
212 |
gctggagatgtttcttgcattttctt |
237 |
Q |
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| T |
32669707 |
gctggagatgttccttgcattttctt |
32669732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 23262962 - 23263104
Alignment:
| Q |
98 |
tgttgactatcaatgaatttattaggtgggtgaagtccgtatcaatttaaactttttgtaaacggtgtcatcgtgattgtatcttaaaatcctcgtctgt |
197 |
Q |
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| T |
23262962 |
tgttgactctcgatgaatttattaggtgggtgaagtgtgtatccatttaaactttttgcaaaaggtatcatcgtggttgtatctcaaaatcctcgtccgt |
23263061 |
T |
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| Q |
198 |
ttcattccggattagctggagatgtttcttgcattttcttcga |
240 |
Q |
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| T |
23263062 |
tttattttggattagttgaagatgttccttgcattttcttcga |
23263104 |
T |
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