View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_427 (Length: 245)
Name: NF10954A_low_427
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_427 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 30573877 - 30573653
Alignment:
| Q |
1 |
taatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatca |
100 |
Q |
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| T |
30573877 |
taatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatca |
30573778 |
T |
|
| Q |
101 |
gtgtatttatatttggtttgtgagagagattaaaagaaatatcactactagtcatggttacattcatattataaaaagtttacccttaatattatcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30573777 |
gtgtatttatatttggtttgtgagagagattaaaagaaatatcattactagtcatggttacattcatattataaaaagtttacccataatattatcctca |
30573678 |
T |
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| Q |
201 |
acggatctcacaatgatatctgaaa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
30573677 |
acggatctcacaatgatatctgaaa |
30573653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 30570401 - 30570277
Alignment:
| Q |
1 |
taatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30570401 |
taatgtgaaagcttggttttgttgcttctgcaaattcacagtagatataacatataatgcaagaaaatgtttatccaaacatatgcttaatggtttatta |
30570302 |
T |
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| Q |
101 |
gtgtatttatatttggtttgtgaga |
125 |
Q |
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|||||||||||||||| |||||||| |
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| T |
30570301 |
gtgtatttatatttggcttgtgaga |
30570277 |
T |
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