View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_431 (Length: 245)
Name: NF10954A_low_431
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_431 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 18454108 - 18454302
Alignment:
| Q |
19 |
tccaacaatatcttaatcaaactctcgcaaattattgtaatatccaagcatgcatcaacatcgacgtataccaataagtacacggtaaagaaaattgtta |
118 |
Q |
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| T |
18454108 |
tccaataatatcttaatcaaactctcgcaaattattgtaatatccaagcatgcatcaacatcgacatataccaataagtacacggtaaagaaaattgtta |
18454207 |
T |
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| Q |
119 |
aatatttaactaaataaaaatttcattagaggacacatgagagggagaagagaagagaagaatgaaaagaatttcccgaatttgtagttttgaatgagat |
218 |
Q |
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| T |
18454208 |
aacatttaactaaataaaaatttcatta-aggacacatgagag-----tgagaagagaagaatgaaaagaatttctcgaatttgtagttttgaatgagat |
18454301 |
T |
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