View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_433 (Length: 245)
Name: NF10954A_low_433
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_433 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 15935869 - 15935689
Alignment:
| Q |
29 |
cctccccagatttgggatatctcgtctccccgacgatgaattatacgagctcctcggcaaaaagctttctaacctcaacgaaggcgaagcagatcgcatc |
128 |
Q |
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| T |
15935869 |
cctccccaaatttgtaatatctcgtctctccgacgatgaattatacgagctcctcggcaaaaagctttctaacctccccgaaggcgaagcagatcgcatc |
15935770 |
T |
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| Q |
129 |
ctcgaagcggagttccaaaccatgttcgctcctttgggagccgttctatctttccttttccctcgtacaaatcgaattact |
209 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15935769 |
ctcgaagcggagttacaaaccatgttcgctcctttgggagccgttctatctttccttttccctcgtacaaatcgaattact |
15935689 |
T |
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