View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_434 (Length: 245)
Name: NF10954A_low_434
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_434 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 28109982 - 28110200
Alignment:
| Q |
5 |
tgagatggacatcaaagatggaagtgacattggatcctttatagggaatcaaaaatggattcctcaaaacacctattttctttccattgagcccttgttt |
104 |
Q |
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| T |
28109982 |
tgagatggtcctcaaagatggaagtgacattggatcctttatagggaatcaaaaatggattcctcaaaacacctattttctttccattgagcccttgttt |
28110081 |
T |
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| Q |
105 |
attgaggaattgcttataaccacctgaaggtataaacttagctgctgattttgtagcttcataatctcttgggtcaaatccaacaattacatcaagcaca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28110082 |
attgaggaattgcttataaccacctgaaggtataaacttagctgctgattttgtagcttcataatctcttgggtcaaatccaacaattacatcaagcaca |
28110181 |
T |
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| Q |
205 |
tgaactgcatctgaaactg |
223 |
Q |
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||||||||||||||||||| |
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| T |
28110182 |
tgaactgcatctgaaactg |
28110200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 28128489 - 28128696
Alignment:
| Q |
16 |
tcaaagatggaagtgacattggatcctttatagggaatcaaaaatggattcctcaaaacacctattttctttccattgagcccttgtttattgaggaatt |
115 |
Q |
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|||||||||||| |||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
28128489 |
tcaaagatggaaatgactttggatccctcataaggaatcaaaaatggattcctcaaaacacctattttctttcctttgagaccttgtttattgaggaatt |
28128588 |
T |
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| Q |
116 |
gcttataaccacctgaaggtataaacttagctgctgattttgtagcttcataatctcttgggtcaaatccaacaattacatcaagcacatgaactgcatc |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28128589 |
gcttataaccacctgaaggtataaacttggctgctgactttgtagcttcataatctcttgtgtcaaatccaacaattacatcaagcacatgaactgcatc |
28128688 |
T |
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| Q |
216 |
tgaaactg |
223 |
Q |
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|||||||| |
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| T |
28128689 |
tgaaactg |
28128696 |
T |
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