View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_438 (Length: 244)
Name: NF10954A_low_438
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_438 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 35933546 - 35933319
Alignment:
| Q |
11 |
atggacatcagcatagatgcgttactggagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaagca |
110 |
Q |
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| T |
35933546 |
atggacataagcatagatgcgttactggagcaatatacaattatacaatgcaattaaaattagctaacgccgatgcttcatctgaattaaaatgtaagca |
35933447 |
T |
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| Q |
111 |
tttacgaattaaattcttaatttgcttgttttatttgaagataggtccttgaatttattacttactttcctcccttaattacagataacttgacagaggc |
210 |
Q |
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| T |
35933446 |
tttacgaattaaattcttaatttgcttgttttatttgaagataggtccttaaatttatt----actttcctcccttaattacagataacttgacagaggc |
35933351 |
T |
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| Q |
211 |
acttatgttcttgtcacatattgttggagatg |
242 |
Q |
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||||||||||||||||||| |||||||||||| |
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| T |
35933350 |
acttatgttcttgtcacattttgttggagatg |
35933319 |
T |
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