View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_442 (Length: 244)
Name: NF10954A_low_442
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_442 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 26933445 - 26933652
Alignment:
| Q |
17 |
catagaagataagtggcctaatattccaattattactgcacgcttctcaaccataaaaatctgtttagagtttatttgcacccccatcttaaagaaataa |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26933445 |
catagaagataagtggcctgatattccaattattactgcacgcttctcaaccataaaaatctgtttagagtttatttgcacccccatcttaaagaaataa |
26933544 |
T |
|
| Q |
117 |
attatcattccaaattctgcaaatgttgaaagtatcattatgcttgctgttggaaataacatctcaaaacttgtgttgtctcgacccaaaaataatggac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26933545 |
attatcattccaaattctgcaaatgttgaaagtatcattatgcttgctgttggaaataacatctcaaaacttgtgttgtctcgacccaaaaataatggac |
26933644 |
T |
|
| Q |
217 |
ccactatg |
224 |
Q |
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|||||||| |
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| T |
26933645 |
ccactatg |
26933652 |
T |
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