View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_449 (Length: 243)
Name: NF10954A_low_449
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_449 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 51856515 - 51856304
Alignment:
| Q |
5 |
gagatggacatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggca |
104 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856515 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggca |
51856416 |
T |
|
| Q |
105 |
ttacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856415 |
ttacagaaaaataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaa |
51856316 |
T |
|
| Q |
205 |
tgtagatactta |
216 |
Q |
| |
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|||||||||||| |
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|
| T |
51856315 |
tgtagatactta |
51856304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 8945692 - 8945490
Alignment:
| Q |
14 |
atcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945692 |
atcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaa |
8945593 |
T |
|
| Q |
114 |
aataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945592 |
aataaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatac |
8945493 |
T |
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| Q |
214 |
tta |
216 |
Q |
| |
|
||| |
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|
| T |
8945492 |
tta |
8945490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 128420 - 128536
Alignment:
| Q |
4 |
tgagatggacatcagtctcaaagttcaatgtaatgttaactattactgttattttggacgcaatattcttgacaatttattgcaacaataggtcaaaggc |
103 |
Q |
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||||||| | || ||||||||||||||||||| | ||||||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||| |
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| T |
128420 |
tgagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggt |
128518 |
T |
|
| Q |
104 |
attacagaaaaataaaat |
121 |
Q |
| |
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|||||||||||| ||||| |
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|
| T |
128519 |
attacagaaaaaaaaaat |
128536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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