View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_451 (Length: 242)

Name: NF10954A_low_451
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_451
NF10954A_low_451
[»] chr1 (4 HSPs)
chr1 (19-215)||(7386417-7386613)
chr1 (42-178)||(19991215-19991350)
chr1 (41-125)||(19322649-19322733)
chr1 (184-215)||(19322751-19322782)
[»] chr5 (3 HSPs)
chr5 (18-215)||(4925202-4925404)
chr5 (18-178)||(35205787-35205947)
chr5 (18-159)||(35211203-35211344)
[»] chr3 (3 HSPs)
chr3 (20-178)||(52314493-52314651)
chr3 (22-178)||(53464903-53465059)
chr3 (46-143)||(1995809-1995906)
[»] chr4 (2 HSPs)
chr4 (19-175)||(23563558-23563714)
chr4 (19-147)||(48265287-48265415)
[»] chr2 (2 HSPs)
chr2 (17-113)||(39375508-39375604)
chr2 (172-215)||(39375627-39375670)
[»] chr8 (1 HSPs)
chr8 (17-134)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (20-141)||(45888823-45888944)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 7386613 - 7386417
Alignment:
Q  19 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 118  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  7386613 ctaagagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagtt 7386514  T
Q  119 aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgtaatactttgagttttatttcttttaattaatagtata 215  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7386513 aaattatacatggtagcaatgcattactacgttccttttcctgtaattgtcagattttgtaatactttgagttttatttcttttaattaatagtata 7386417  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 19991215 - 19991350
Alignment:
Q  42 ccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgca 141  Q
    |||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||||  |||| |    
T  19991215 ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatgga 19991314  T
Q  142 ttactacgttccttttccagtaattgttagattttgt 178  Q
    ||||||| |||||||||| | ||||||| ||||||||    
T  19991315 ttactaccttccttttcctgcaattgtt-gattttgt 19991350  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 19322649 - 19322733
Alignment:
Q  41 tccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactat 125  Q
    |||||||||||||||| ||| ||||||| | ||| |||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  19322649 tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat 19322733  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 215
Target Start/End: Original strand, 19322751 - 19322782
Alignment:
Q  184 tttgagttttatttcttttaattaatagtata 215  Q
    ||||||||||||||||||||||||||||||||    
T  19322751 tttgagttttatttcttttaattaatagtata 19322782  T

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Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 4925404 - 4925202
Alignment:
Q  18 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  4925404 actaagagcatacgcatcgtctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagt 4925305  T
Q  118 taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt-----------aatactttgagttttatttcttttaatt 206  Q
    |||||||||||||||| ||||||||||||||||||||      |||||||||||||||| |           |||||||||||| |||||||||||||||    
T  4925304 taaactatacatggtaacaatgcattactacgttcct------gtaattgttagattttatacatattttagaatactttgagtattatttcttttaatt 4925211  T
Q  207 aatagtata 215  Q
    |||||||||    
T  4925210 aatagtata 4925202  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 35205947 - 35205787
Alignment:
Q  18 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 117  Q
    ||||||||||| ||||||| |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35205947 actaagagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35205848  T
Q  118 taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 178  Q
    |||||||| ||||| || ||||||||||| | |||||||||| | ||||||  ||||||||    
T  35205847 taaactatccatggaagtaatgcattactgccttccttttcctgcaattgtctgattttgt 35205787  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 35211203 - 35211344
Alignment:
Q  18 actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagt 117  Q
    ||||||||||| ||||||  |||  |||||||||||||||||| || |||||||| | ||||||||| |||||  ||||||||| ||| |||||||| ||    
T  35211203 actaagagcatgcacatcacctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt 35211302  T
Q  118 taaactatacatggtagcaatgcattactacgttccttttcc 159  Q
    |||||||| |||||||| ||||||||||| | ||||||||||    
T  35211303 taaactatccatggtagtaatgcattactgccttccttttcc 35211344  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 52314651 - 52314493
Alignment:
Q  20 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 119  Q
    ||||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||    
T  52314651 taagagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagtta 52314552  T
Q  120 aactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 178  Q
    |||||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  52314551 aactatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 52314493  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 53465059 - 53464903
Alignment:
Q  22 agagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaa 121  Q
    ||||||| ||||||| |||  |||||||||||||||||| |  |||||||| | ||||||||| |||||  ||||||||| ||| |||||||||||||||    
T  53465059 agagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaa 53464960  T
Q  122 ctatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt 178  Q
    |||| |||||||| ||||||||||||| |||||||||| | ||||||  ||||||||    
T  53464959 ctatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt 53464903  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 1995906 - 1995809
Alignment:
Q  46 atgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagttaaactatacatggtagcaatgcatt 143  Q
    ||||||||||  ||||| || ||||| || | ||||||||||| | |||||||||| |||||  ||||||| ||||| |  ||| |||||||||||||    
T  1995906 atgggtggtaatacactgactaatgcacttgagtcataatatcttggataattggcattggatatgagtagctaaaccaaccatagtagcaatgcatt 1995809  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 23563714 - 23563558
Alignment:
Q  19 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 118  Q
    |||||||||| ||||||| |||   |||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||||    
T  23563714 ctaagagcatgcacatcggctgcatatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagtt 23563615  T
Q  119 aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattt 175  Q
    ||||||| |||||| | ||||||||||||| |||||||||| | |||||| ||||||    
T  23563614 aaactatccatggtggtaatgcattactaccttccttttcctgcaattgtcagattt 23563558  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 48265415 - 48265287
Alignment:
Q  19 ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtt 118  Q
    |||||| ||| ||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||||| ||| ||||||||||||    
T  48265415 ctaagaacatgcacatcgcctgcacatatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagtt 48265316  T
Q  119 aaactatacatggtagcaatgcattacta 147  Q
    ||||||| |||||||| ||||||||||||    
T  48265315 aaactatccatggtagtaatgcattacta 48265287  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 39375508 - 39375604
Alignment:
Q  17 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgag 113  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  39375508 cactaagagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaattgag 39375604  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 39375627 - 39375670
Alignment:
Q  172 attttgtaatactttgagttttatttcttttaattaatagtata 215  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  39375627 attttgtaatactttaagttttatttcttttaattaataatata 39375670  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 40278487 - 40278604
Alignment:
Q  17 cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtag 116  Q
    |||| ||||||||||||||| |||  ||||||||||||||||||||  |||||||| | ||||||||| ||||| |||||||| | ||| ||||||||||    
T  40278487 cacttagagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtag 40278586  T
Q  117 ttaaactatacatggtag 134  Q
    ||||||||| ||||||||    
T  40278587 ttaaactatccatggtag 40278604  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 45888944 - 45888823
Alignment:
Q  20 taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcatagataattggctttggaattgagtagtta 119  Q
    ||||||||||||||||||| ||| | || |||||||  ||| ||||||||||| | |||||||| || | | |||||||||| |||||  ||||||| ||    
T  45888944 taagagcatacacatcgtcggtcaaaataggtggtaatacattaaccaatgcttttgtgtcatagtaacttggataattggcattggatatgagtagcta 45888845  T
Q  120 aactatacatggtagcaatgca 141  Q
    || ||| ||| || ||||||||    
T  45888844 aattatccatagttgcaatgca 45888823  T

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