View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_453 (Length: 242)
Name: NF10954A_low_453
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_453 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 42959789 - 42960003
Alignment:
| Q |
24 |
aacacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaattgttttcagcttatttcgttaaactg------------a |
111 |
Q |
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| T |
42959789 |
aacacttacatatatgtgtttgaaagggcttatcaaaatatattataacatgtttataaactgttttcagcttatttcgttaaactgttcatgaaacgga |
42959888 |
T |
|
| Q |
112 |
gttatcagtaagccctatacatacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42959889 |
gttatcagtaagccctatacatacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaa |
42959988 |
T |
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| Q |
212 |
gtctgttaacaccaa |
226 |
Q |
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| T |
42959989 |
gtctgttaacaccaa |
42960003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 5504827 - 5504741
Alignment:
| Q |
131 |
catacctgcccatcatcatgacagtagcttgaggatttgttcccggcgattcggtaaatgttgatccatctatgacacgaagtctgt |
217 |
Q |
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| T |
5504827 |
cataccttcccatcatcatcacagtggcttgaggatttgttcctggtgattcagtaaacgttgaaccatcgacgactcggagtctgt |
5504741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 11707142 - 11707094
Alignment:
| Q |
52 |
cttatcaaaatatattataacatgtttataaattgttttcagcttattt |
100 |
Q |
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| T |
11707142 |
cttatcaaaatagattatgacatgtttataagttgttttcagcttattt |
11707094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 35608160 - 35608112
Alignment:
| Q |
124 |
ccctatacatacctgcccatcatcatgacagtagcttgaggatttgttc |
172 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| ||| |||| |
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| T |
35608160 |
ccctgtacatgcctgcccatcatcatgacagtagcttgagaattggttc |
35608112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 101
Target Start/End: Complemental strand, 35064923 - 35064893
Alignment:
| Q |
71 |
acatgtttataaattgttttcagcttatttc |
101 |
Q |
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| T |
35064923 |
acatgtttataaattgttttcagcttatttc |
35064893 |
T |
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