View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_454 (Length: 242)
Name: NF10954A_low_454
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_454 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 38411434 - 38411670
Alignment:
| Q |
7 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataaccgcatacaagaaaacaggattcgagaagaacagaaagtaaattcatcaaaat |
106 |
Q |
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| T |
38411434 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataactgcatacaagagaacaggattcgagaagaacagaaagtaaattcatcaaaat |
38411533 |
T |
|
| Q |
107 |
ccaaggtatccgtaactgaaccgaagcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatccgcttc |
206 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
38411534 |
ccaaggtatccgtaactgaaccgaagcagaaacgtgaagaaaggagaagtgaatggagtcgaaacaacataacaaaggggttaaagctcagatcctcttc |
38411633 |
T |
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| Q |
207 |
tcaaggtaaaaagaagt-aaagaaaattcgtttctat |
242 |
Q |
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| T |
38411634 |
aaaaggtaaaaagaggtaaaaaaaaattcgtttctat |
38411670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 38417078 - 38417272
Alignment:
| Q |
7 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataaccgcatacaagaaaacaggattcgagaagaacagaaagtaaattcatcaaaat |
106 |
Q |
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| T |
38417078 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataactgcatacaagagaacaggattcgagaagaacagaaagtaaattcatcaaaat |
38417177 |
T |
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| Q |
107 |
ccaaggtatccgtaactgaaccgaagcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatcc |
201 |
Q |
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| T |
38417178 |
ccaaggtatccgtaactgaaccgaagcagaaacgtgaagaaaggagaagtgaatggagtcgaaacaacataacaaaggggttaaagctcagatcc |
38417272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 24146 - 24380
Alignment:
| Q |
7 |
atcaccacacaaacaacaattcattccgaattcgaaacctctgataaccgcatacaagaaaacaggattcgagaagaacagaaagtaaattcatcaaaat |
106 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
24146 |
atcaccgcacaaacaacaattcattccgaatttgaaacctctaacaaccgcatacaagagaacaggattcgagaagaacagaaagcaaattcatcaaaat |
24245 |
T |
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| Q |
107 |
ccaaggtatccgtaactgaaccgaagcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatccgcttc |
206 |
Q |
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| T |
24246 |
ccaaggtatccgtaactgaaccgaggcagaaacgcgaaggaaggagaagtgaacggagtcgaaacaacataaccaaggggttaaagctcagatccgcttc |
24345 |
T |
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| Q |
207 |
tcaaggtaaaaagaagtaaagaaaattcgtttctat |
242 |
Q |
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|||||||||||| ||||| ||||| ||||||||| |
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| T |
24346 |
aaaaggtaaaaagaggtaaa-aaaatccgtttctat |
24380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 33298938 - 33298975
Alignment:
| Q |
205 |
tctcaaggtaaaaagaagtaaagaaaattcgtttctat |
242 |
Q |
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| T |
33298938 |
tctcaaggtaaaaagaggtaaaaaaaattcgtttctat |
33298975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 50825203 - 50825240
Alignment:
| Q |
205 |
tctcaaggtaaaaagaagtaaagaaaattcgtttctat |
242 |
Q |
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| T |
50825203 |
tctcaaggtaaaaagaggtaaaaaaaattcgtttctat |
50825240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 50850657 - 50850620
Alignment:
| Q |
205 |
tctcaaggtaaaaagaagtaaagaaaattcgtttctat |
242 |
Q |
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|||||||||||||||| ||||| ||||||||||||||| |
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| T |
50850657 |
tctcaaggtaaaaagaggtaaaaaaaattcgtttctat |
50850620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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