View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_455 (Length: 242)
Name: NF10954A_low_455
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_455 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5351573 - 5351339
Alignment:
| Q |
1 |
gtgcagtagatgcacatactgctgcaattctatttcatgtaagaacaataacttgaaagacttgatgttttcgtaaaatgcacnnnnnnnnngttgctgc |
100 |
Q |
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| T |
5351573 |
gtgcagtagatgcacatactgctgcaattctatttcatgtaagaacaataacttgaaagacttgatgttttcgtaaaatgcactttttttttgttgctgc |
5351474 |
T |
|
| Q |
101 |
attctatatactagtaattttaacttaaaatttggatttcaggattgtgtcatgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtag |
200 |
Q |
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| T |
5351473 |
attctatata------attttaacttaaaatttggatttcaggattgtgtcatgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtag |
5351380 |
T |
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| Q |
201 |
agtttctgacagaagttgataaaattctggtaacatattct |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
5351379 |
agtttctgacagaagttgataaaattctggtaacattttct |
5351339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 5290088 - 5290007
Alignment:
| Q |
140 |
caggattgtgtcatgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgata |
221 |
Q |
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| T |
5290088 |
caggattgtgtcatgactgctttaagagagaaaacagtcattctagttactcatcaagtggagtttctctcagaagttgata |
5290007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 5282087 - 5282006
Alignment:
| Q |
140 |
caggattgtgtcatgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgata |
221 |
Q |
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| T |
5282087 |
caggactgtgtcatgaatgctttaagagagaaaacagtcattctagttactcatcaagtggagtttctctcagaagttgata |
5282006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 5314085 - 5314136
Alignment:
| Q |
170 |
aaaacagtcatcctagtgacacatcaagtagagtttctgacagaagttgata |
221 |
Q |
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||||||||||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
5314085 |
aaaacagtcattttagtgacacatcaagtggagtttctctcagaagttgata |
5314136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 31526241 - 31526186
Alignment:
| Q |
152 |
atgagtgctctcaaagagaaaacagtcatcctagtgacacatcaagtagagtttct |
207 |
Q |
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|||| |||||| | ||||||||||||||| || |||||||||||||| |||||||| |
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| T |
31526241 |
atgactgctctaagagagaaaacagtcattcttgtgacacatcaagtggagtttct |
31526186 |
T |
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