View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_457 (Length: 242)

Name: NF10954A_low_457
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_457
NF10954A_low_457
[»] chr2 (11 HSPs)
chr2 (24-207)||(41826619-41826802)
chr2 (23-156)||(15144208-15144349)
chr2 (24-151)||(40113466-40113605)
chr2 (31-157)||(3950063-3950198)
chr2 (24-159)||(24138440-24138584)
chr2 (24-157)||(23888338-23888480)
chr2 (24-157)||(23892414-23892556)
chr2 (31-205)||(670075-670253)
chr2 (24-203)||(662836-663019)
chr2 (24-159)||(14661318-14661462)
chr2 (24-100)||(18341573-18341655)
[»] chr8 (9 HSPs)
chr8 (24-189)||(44626178-44626351)
chr8 (24-151)||(26005484-26005622)
chr8 (24-159)||(32038046-32038190)
chr8 (24-159)||(38143933-38144078)
chr8 (24-159)||(17497452-17497595)
chr8 (66-144)||(45266087-45266168)
chr8 (66-116)||(38151031-38151081)
chr8 (118-157)||(27146-27185)
chr8 (70-102)||(18324956-18324988)
[»] chr1 (6 HSPs)
chr1 (24-178)||(39574550-39574711)
chr1 (32-178)||(39581107-39581260)
chr1 (24-104)||(47858163-47858249)
chr1 (24-101)||(9758362-9758445)
chr1 (24-101)||(9764978-9765060)
chr1 (66-102)||(24523142-24523178)
[»] chr3 (13 HSPs)
chr3 (24-159)||(32280712-32280857)
chr3 (25-151)||(3469908-3470042)
chr3 (24-159)||(31112435-31112574)
chr3 (24-159)||(32285656-32285801)
chr3 (24-151)||(45677835-45677972)
chr3 (25-151)||(19240464-19240598)
chr3 (24-151)||(39032685-39032828)
chr3 (24-146)||(29960875-29961006)
chr3 (24-146)||(30010080-30010211)
chr3 (24-101)||(39039758-39039840)
chr3 (66-111)||(38445749-38445794)
chr3 (66-101)||(39350962-39350997)
chr3 (69-112)||(50158281-50158324)
[»] chr7 (6 HSPs)
chr7 (24-198)||(26450822-26451003)
chr7 (31-147)||(267696-267820)
chr7 (24-159)||(32517173-32517319)
chr7 (24-159)||(48853655-48853799)
chr7 (24-103)||(29148714-29148798)
chr7 (66-100)||(40771315-40771349)
[»] chr6 (9 HSPs)
chr6 (31-175)||(27101564-27101716)
chr6 (31-175)||(27143386-27143538)
chr6 (31-156)||(9972836-9972972)
chr6 (31-151)||(23848518-23848646)
chr6 (70-157)||(32932257-32932346)
chr6 (31-151)||(18338175-18338305)
chr6 (24-151)||(7553362-7553500)
chr6 (31-113)||(22958071-22958160)
chr6 (31-113)||(23830232-23830321)
[»] chr5 (6 HSPs)
chr5 (24-151)||(22729888-22730023)
chr5 (24-198)||(11339880-11340061)
chr5 (24-156)||(35941063-35941202)
chr5 (23-102)||(43097500-43097585)
chr5 (24-59)||(36950181-36950216)
chr5 (106-159)||(36950068-36950123)
[»] chr4 (10 HSPs)
chr4 (23-150)||(42567597-42567731)
chr4 (24-151)||(24423153-24423289)
chr4 (31-115)||(35904976-35905066)
chr4 (24-90)||(33366813-33366885)
chr4 (123-207)||(2229029-2229113)
chr4 (24-100)||(36048945-36049027)
chr4 (66-101)||(54256361-54256396)
chr4 (23-57)||(13393727-13393761)
chr4 (23-57)||(13396866-13396900)
chr4 (117-159)||(33361763-33361805)
[»] scaffold0502 (2 HSPs)
scaffold0502 (31-151)||(8999-9129)
scaffold0502 (31-151)||(4299-4429)
[»] scaffold0040 (2 HSPs)
scaffold0040 (24-159)||(60354-60500)
scaffold0040 (24-159)||(67830-67976)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 41826619 - 41826802
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctacccggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcgtgctaa 123  Q
    |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41826619 gttggaccatttagctaagcccaatgagaggtccctgcccgtttagctatttaaacgtcatcccatcagacggttaaactactctgaacattcgtgctaa 41826718  T
Q  124 acggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtatacaattccttattcc 207  Q
    ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  41826719 acggaatgagggtagtcatccctctcatccttctgatagttattcttcatcaatctaatttaaaagtatacaattccttattcc 41826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 15144349 - 15144208
Alignment:
Q  23 agttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc 116  Q
    ||||||| |||||| |||||||||||||||| ||||| |||      | |||||||||||||||||||||||||||| |||||||||| ||| |||||||    
T  15144349 agttggaccatttaactaagcccaatgagagatccctgccctcagccgtttagctatttaaatgtcatcccatcagatggttaaactattctaaacattc 15144250  T
Q  117 --gtgctaaacggaatgaggatagtcatccctctcattcttc 156  Q
      |||||||||||||||||| ||||||||| |||||| ||||    
T  15144249 tggtgctaaacggaatgagggtagtcatccgtctcatccttc 15144208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 40113466 - 40113605
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccat----cagacggttaaactactctgaaca 113  Q
    |||||| ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||    || |||||||||||| ||||||||    
T  40113466 gttggaccatttagctaagcccaatgagaggtccctgccctcagctgtttagctatttaaacgtcatcccatgcatcaaacggttaaactattctgaaca 40113565  T
Q  114 ttc--gtgctaaacggaatgaggatagtcatccctctcat 151  Q
    |||  |||||||||||||||||| ||||||||||||||||    
T  40113566 ttctggtgctaaacggaatgagggtagtcatccctctcat 40113605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 3950063 - 3950198
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc---gtgct 121  Q
    ||||||||||||||||||||||||||| | |||      | ||| ||||||||| |||||||||| |||||| ||||||||| | ||||||    |||||    
T  3950063 catttagctaagcccaatgagaggtccttgccctcagccgtttaactatttaaacgtcatcccatgagacggataaactactataaacatttatggtgct 3950162  T
Q  122 aaacggaatgaggatagtcatccctctcattcttct 157  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3950163 aaacggaatgagggtagtcatccctctcattcttct 3950198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 24138440 - 24138584
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 116  Q
    |||||| ||||||| |||| |||||||||||||||| |||      | ||||||||||||| |||||||||||||||||||||| || |||||||  |||    
T  24138440 gttggaccatttagttaagtccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaatattctgaactcttc 24138539  T
Q  117 --gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
      |||||| ||||||||||| |||||||| ||||||| |||||||    
T  24138540 tggtgctacacggaatgagggtagtcatctctctcatccttctga 24138584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 23888480 - 23888338
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 114  Q
    |||||| ||||||||||| ||||||||||||||||| |||      | ||||||||||||| ||||||||| ||||||||||||||| | ||||  | |     
T  23888480 gttggaccatttagctaatcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccaccagacggttaaactattgtgaattcttc 23888381  T
Q  115 tcgtgctaaacggaatgaggatagtcatccctctcattcttct 157  Q
    | |||||| ||||||||||| |||||||| ||||||| |||||    
T  23888380 tagtgctacacggaatgagggtagtcatctctctcatccttct 23888338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 23892556 - 23892414
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 114  Q
    |||||| ||||||||||| ||||||||||||||||| |||      | ||||||||||||| ||||||||| ||||||||||||||| | ||||  | |     
T  23892556 gttggaccatttagctaatcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccaccagacggttaaactattgtgaattcttc 23892457  T
Q  115 tcgtgctaaacggaatgaggatagtcatccctctcattcttct 157  Q
    | |||||| ||||||||||| |||||||| ||||||| |||||    
T  23892456 tagtgctacacggaatgagggtagtcatctctctcatccttct 23892414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 205
Target Start/End: Original strand, 670075 - 670253
Alignment:
Q  31 catttagctaagcccaatgagaggt-----ccct-acccggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 122  Q
    |||||||||||||||||||||||||     |||| | ||| | ||||||||||| |||||||||||||    ||||| || |||||| ||||  ||||||    
T  670075 catttagctaagcccaatgagaggttcatgccctcagccgttcagctatttaaacgtcatcccatcag----ttaaattattctgaatattctggtgcta 670170  T
Q  123 aacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtatacaattccttatt 205  Q
    |||||||||||| |||||||||||||||| | |||||   ||||  |||| ||| |||||| ||| ||| |||||| ||||||    
T  670171 aacggaatgagggtagtcatccctctcatccgtctgacaattatgtttcaccaacctaatttaaaggtacacaatttcttatt 670253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 662836 - 663019
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 116  Q
    |||||| |||||||||||| ||||||||||||| || |||      | | ||||||||||| |||||||||    |||||||||||| |||||| | ||     
T  662836 gttggaccatttagctaagtccaatgagaggtcactgccctcagtcgttcagctatttaaacgtcatccca----acggttaaactattctgaatagtct 662931  T
Q  117 -gtgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtatacaattcctta 203  Q
     |||||||||||||||||| || |||||  |||||| ||| ||||  |||| ||||| ||| |||||||||| ||| |||||| ||||    
T  662932 ggtgctaaacggaatgagggtaatcatcaatctcatccttatgataattatgcttcaccaacctaattcaaaggtacacaatttctta 663019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 14661318 - 14661462
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctac------ccggttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 114  Q
    |||||| ||||||||||||| ||||| ||||||||| |      ||| ||||||||||||| |||||||||||||||||||||| || | ||||  | |     
T  14661318 gttggaccatttagctaagctcaatgggaggtccctgctctcagccgtttagctatttaaacgtcatcccatcagacggttaaattattgtgaattcttc 14661417  T
Q  115 tcgtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
    | || ||| ||||||||||| |||| ||||||||||| |||||||    
T  14661418 tagtactacacggaatgagggtagttatccctctcatccttctga 14661462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 18341655 - 18341573
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaa 100  Q
    |||||| ||||||||||||| ||||||||||||||| ||       | ||||||||||||| |||||||||||||||||||||    
T  18341655 gttggaccatttagctaagctcaatgagaggtccctgccttcaactgtttagctatttaaacgtcatcccatcagacggttaa 18341573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 44626178 - 44626351
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctacc------cggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 116  Q
    |||||| |||||||||||||||||||||||||| || ||      || ||||||||||||| |||||| |||||||||||||||||| |||||| ||||     
T  44626178 gttggaccatttagctaagcccaatgagaggtctctgccttcagccgtttagctatttaaacgtcatctcatcagacggttaaactattctgaatattcc 44626277  T
Q  117 -gtgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaag 189  Q
     |||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  44626278 agtgctaaacggaatgagggtagtcatccctctcatccttctgacggttatccttcatcaacctaattcaaaag 44626351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 26005622 - 26005484
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactc---tgaacat 114  Q
    |||||| |||||||||||||||||||||||||||||||||      | ||||||||||||| |||||||||||| |||||||||||| ||   |||||||    
T  26005622 gttggaccatttagctaagcccaatgagaggtccctaccctcagccgtttagctatttaaacgtcatcccatcatacggttaaactattcttatgaacat 26005523  T
Q  115 tc--gtgctaaacggaatgaggatagtcatccctctcat 151  Q
    ||  |||||||||||||||||| |||||||| |||||||    
T  26005522 tctggtgctaaacggaatgagggtagtcatctctctcat 26005484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 32038190 - 32038046
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 116  Q
    |||||| ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||||||||| |||||||  |||    
T  32038190 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaactattctgaactcttc 32038091  T
Q  117 --gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
      ||| || ||||||||||| |||||||||||||||| |||||||    
T  32038090 tggtgttacacggaatgagggtagtcatccctctcatccttctga 32038046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 38143933 - 38144078
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc--------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacatt 115  Q
    |||||| |||||| | |||||||||||||||||||| |||        | |||||||||||||  ||||||||||| |||||||||||| ||||||||||    
T  38143933 gttggaccatttatccaagcccaatgagaggtccctgccccctcagccgtttagctatttaaacctcatcccatcatacggttaaactattctgaacatt 38144032  T
Q  116 c--gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
    |  |||||| ||||||||| | |||||||||||||||| |||||||    
T  38144033 ccggtgctagacggaatgacggtagtcatccctctcatccttctga 38144078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 17497595 - 17497452
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacat--t 115  Q
    |||||| |||||||| || ||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||||  ||| | |||||||  |    
T  17497595 gttggaccatttagccaaacccaatgagaggtccctgccctcagtcgtttagctatttaaacgtcatcccatcagacggttattctattttgaacattat 17497496  T
Q  116 cgtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
     |||||||||||||||||| ||||||| | |||||| |||||||    
T  17497495 ggtgctaaacggaatgagggtagtcattcttctcatccttctga 17497452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 45266168 - 45266087
Alignment:
Q  66 ttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc----gtgctaaacggaatgaggatagtcatcc 144  Q
    ||||||||||||| ||||| ||||||||||||||||||| | |||||||||    | |||||||||||||||| |||||||||    
T  45266168 ttagctatttaaacgtcattccatcagacggttaaactattttgaacattcttctgcgctaaacggaatgagg-tagtcatcc 45266087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 38151031 - 38151081
Alignment:
Q  66 ttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc 116  Q
    ||||||||||||| |||| |||||||||||||||||||| | |||||||||    
T  38151031 ttagctatttaaacgtcaccccatcagacggttaaactattatgaacattc 38151081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 27146 - 27185
Alignment:
Q  118 tgctaaacggaatgaggatagtcatccctctcattcttct 157  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  27146 tgctaaacgaaatgagggtagtcatccctctcattcttct 27185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 18324956 - 18324988
Alignment:
Q  70 ctatttaaatgtcatcccatcagacggttaaac 102  Q
    ||||||||| |||||||||||||||||||||||    
T  18324956 ctatttaaacgtcatcccatcagacggttaaac 18324988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 39574550 - 39574711
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaaca--tt 115  Q
    |||||| ||||||||||||||||||||||||||||| |||      | ||||||||||||| |||||||||||||||||||||||||||| |||||   |    
T  39574550 gttggaccatttagctaagcccaatgagaggtccctgcccttagccgtttagctatttaaacgtcatcccatcagacggttaaactactc-gaacaatat 39574648  T
Q  116 cgtgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatc 178  Q
     ||||||||||||||||||||| ||||||||||||| |||||||  ||||| |||||| ||||    
T  39574649 ggtgctaaacggaatgaggataatcatccctctcatccttctgacagttatccttcatgaatc 39574711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 39581107 - 39581260
Alignment:
Q  32 atttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacat--tcgtgctaa 123  Q
    |||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||| |||| ||||||||||||||| ||||||  | |||||||    
T  39581107 atttagctaagcccaatgagaggtccctgccctcagtcgtttagctatttaaacgtcatccaatcaaacggttaaactactc-gaacattatggtgctaa 39581205  T
Q  124 acggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatc 178  Q
    || ||||||||  ||||||||||||||| ||| |||  ||||| |||||| ||||    
T  39581206 acagaatgagggaagtcatccctctcatccttgtgacagttatccttcatgaatc 39581260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 47858163 - 47858249
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccct------acccggttagctatttaaatgtcatcccatcagacggttaaacta 104  Q
    |||||| |||||||||||||||||||||||||||||      | ||| ||||||||||||| |||||||||||||| ||||||||||    
T  47858163 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagatggttaaacta 47858249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 9758445 - 9758362
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctacc------cggttagctatttaaatgtcatcccatcagacggttaaa 101  Q
    |||||| |||||||||||||||||||||||||| || ||      |  ||||||||||||| ||||||||||||||||||||||    
T  9758445 gttggaacatttagctaagcccaatgagaggtcactgccttcagccatttagctatttaaacgtcatcccatcagacggttaaa 9758362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 9765060 - 9764978
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccct------acccggttagctatttaaatgtcatcccatcagacggttaaa 101  Q
    |||||| |||||||||||||||||||||||||||||      | ||| ||||||||||||| ||||||||||| ||||||||||    
T  9765060 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatc-gacggttaaa 9764978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 24523178 - 24523142
Alignment:
Q  66 ttagctatttaaatgtcatcccatcagacggttaaac 102  Q
    ||||||||||||| |||||||||||||||||||||||    
T  24523178 ttagctatttaaacgtcatcccatcagacggttaaac 24523142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 32280857 - 32280712
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 116  Q
    |||||| |||||||||||||||||||||||||||||||||      | ||||||||||||| |||||||||||| |||||||||||| |||||||||||     
T  32280857 gttggaccatttagctaagcccaatgagaggtccctaccctcagccgtttagctatttaaacgtcatcccatcatacggttaaactattctgaacattct 32280758  T
Q  117 ---gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
       ||||||||| ||| |||| |||||||||||||||| |||||||    
T  32280757 ggtgtgctaaacagaacgagggtagtcatccctctcatccttctga 32280712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 3469908 - 3470042
Alignment:
Q  25 ttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-- 116  Q
    ||||| |||||||| |||||||||||||||||||| |||      | ||| ||||||||| |||||||||||||||||||||||||||||||||||||      
T  3469908 ttggaccatttagcgaagcccaatgagaggtccctgccctcagccgtttaactatttaaacgtcatcccatcagacggttaaactactctgaacattctg 3470007  T
Q  117 gtgctaaacggaatgaggatagtcatccctctcat 151  Q
    |||||||||||||||||| || |||||||||||||    
T  3470008 gtgctaaacggaatgagggtaatcatccctctcat 3470042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 31112435 - 31112574
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 117  Q
    |||||| ||||||||||||||||||||||||||| | |||      | ||| ||||||||| ||||||||||||||||||||||||| |||||||  | |    
T  31112435 gttggaccatttagctaagcccaatgagaggtccatgcccttagccgtttaactatttaaacgtcatcccatcagacggttaaactattctgaac--tgg 31112532  T
Q  118 tgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
    ||||||||||||||||| |||||||||||||| | |||||||    
T  31112533 tgctaaacggaatgagggtagtcatccctctcctccttctga 31112574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 159
Target Start/End: Complemental strand, 32285801 - 32285656
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 116  Q
    |||||| |||||||||||||| ||||||||||| || |||      | ||| | ||||||| ||||||||||||||||||||||||| |||||||||||     
T  32285801 gttggaccatttagctaagcctaatgagaggtctctgccctcagccgtttaacaatttaaacgtcatcccatcagacggttaaactattctgaacattcc 32285702  T
Q  117 ---gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
       |||||||||||||||||| |||||||| ||||||| |||||||    
T  32285701 ggtgtgctaaacggaatgagggtagtcatctctctcatccttctga 32285656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 45677972 - 45677835
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtca-tcccatcagacggttaaactactctgaac-att 115  Q
    |||||| |||||| |||||||||||||||||||||| |||      | ||||||||||||| |||| ||||||||||||||||||||| |||||||  ||    
T  45677972 gttggaccatttacctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcaatcccatcagacggttaaactattctgaactctt 45677873  T
Q  116 c--gtgctaaacggaatgaggatagtcatccctctcat 151  Q
    |  |||||| ||||||||||| ||||||||||||||||    
T  45677872 ctggtgctacacggaatgagggtagtcatccctctcat 45677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 19240598 - 19240464
Alignment:
Q  25 ttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-- 116  Q
    ||||| |||||||||||||| |||||||||||||| |||      | ||| ||||||||| || |||||||||||||||||||||| | |||| ||||      
T  19240598 ttggaccatttagctaagcctaatgagaggtccctgccctcatccgtttaactatttaaacgttatcccatcagacggttaaactattatgaatattctg 19240499  T
Q  117 gtgctaaacggaatgaggatagtcatccctctcat 151  Q
    |||||||| ||||||||| |||||||| |||||||    
T  19240498 gtgctaaatggaatgagggtagtcatctctctcat 19240464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 39032828 - 39032685
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggtt-aaact-------actctg 109  Q
    |||||| ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||| |||||       | ||||    
T  39032828 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaactattctgaattctg 39032729  T
Q  110 aacattc--gtgctaaacggaatgaggatagtcatccctctcat 151  Q
    |||||||  |||||||| ||||||||| ||||||||||||||||    
T  39032728 aacattctggtgctaaagggaatgagggtagtcatccctctcat 39032685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 29961006 - 29960875
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggtt-aaactactctgaacattc 116  Q
    |||||| ||||||||||| |||||||||||||| || |||      | ||||||||||||| |||||||||||||| |||| |||| | |||||||||||    
T  29961006 gttggaccatttagctaaacccaatgagaggtctctgccctcagccgtttagctatttaaacgtcatcccatcagatggttaaaaccattctgaacattc 29960907  T
Q  117 --gtgctaaacggaatgaggatagtcatccct 146  Q
       | ||| ||||||||||| |||||||||||    
T  29960906 tgatactagacggaatgagggtagtcatccct 29960875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 30010211 - 30010080
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggtt-aaactactctgaacattc 116  Q
    |||||| ||||||||||| |||||||||||||| || |||      | ||||||||||||| |||||||||||||| |||| |||| | |||||||||||    
T  30010211 gttggaccatttagctaaacccaatgagaggtctctgccctcagccgtttagctatttaaacgtcatcccatcagatggttaaaaccattctgaacattc 30010112  T
Q  117 --gtgctaaacggaatgaggatagtcatccct 146  Q
       | ||| ||||||||||| |||||||||||    
T  30010111 tgatactagacggaatgagggtagtcatccct 30010080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 39039840 - 39039758
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctacc-----cggttagctatttaaatgtcatcccatcagacggttaaa 101  Q
    |||||| |||||||||||||||||||||||||||   ||     || ||||||||||||| |||||| |||||||||||||||    
T  39039840 gttggaccatttagctaagcccaatgagaggtcctgccctcagtcgtttagctatttaaacgtcatcgcatcagacggttaaa 39039758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 38445749 - 38445794
Alignment:
Q  66 ttagctatttaaatgtcatcccatcagacggttaaactactctgaa 111  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||    
T  38445749 ttagctatttaaacgtcatctcatcagacggttaaactattctgaa 38445794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 39350962 - 39350997
Alignment:
Q  66 ttagctatttaaatgtcatcccatcagacggttaaa 101  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39350962 ttagctatttaaacgtcatcccatcagacggttaaa 39350997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 50158281 - 50158324
Alignment:
Q  69 gctatttaaatgtcatcccatcagacggttaaactactctgaac 112  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||    
T  50158281 gctatttaaatgtgatcacatcagacggttaaactattctgaac 50158324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 26451003 - 26450822
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 117  Q
    |||||| ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||||| | | |||||||| ||     
T  26451003 gttggaccatttagctaagcccaatgagaggtcccttccctcagccgtttagctatttaaacgtcatcccatcagacggttaagc-attctgaacactct 26450905  T
Q  118 --tgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtatacaatt 198  Q
      ||||||||||||||||| ||||||||||||| || ||| |||  ||||| ||||||||| |||||||||| ||| ||||||    
T  26450904 actgctaaacggaatgagggtagtcatccctcttatccttttgacagttatccttcatcaacctaattcaaaggtacacaatt 26450822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 267820 - 267696
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 122  Q
    ||||||||||||||||||||||||||||| |||      | ||||||||||||| |||||||||||| |||||||||||| |||||||||||  ||||||    
T  267820 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcaaacggttaaactattctgaacattctggtgcta 267721  T
Q  123 aacggaatgaggatagtcatccctc 147  Q
    |||||||||||| ||||||| ||||    
T  267720 aacggaatgagggtagtcattcctc 267696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 32517173 - 32517319
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactct---gaacat 114  Q
    |||||| ||||||||||||||||||||||||||| | |||      | ||||||||||||| |||||||||| ||||||||||| || |||   ||||||    
T  32517173 gttggaccatttagctaagcccaatgagaggtccatgccctcagccgtttagctatttaaacgtcatcccattagacggttaaagtattcttctgaacat 32517272  T
Q  115 tc--gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
    ||  |||||||||||||||||| |||||||||||||||| |||||||    
T  32517273 tctggtgctaaacggaatgagggtagtcatccctctcatccttctga 32517319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 48853655 - 48853799
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccct------acccggttagctatttaaatgtcatcccatcagacggttaaactactctgaa--cat- 114  Q
    |||||| |||||||||||||||||||||||||||||      | ||| ||| ||||||||| ||||||||||||||||||||||||| | ||||  | |     
T  48853655 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttaactatttaaacgtcatcccatcagacggttaaactattgtgaattcttc 48853754  T
Q  115 tcgtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
    | |||||| ||||||||||| |||||||||||||||| |||||||    
T  48853755 tggtgctacacggaatgagggtagtcatccctctcatccttctga 48853799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 29148798 - 29148714
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtcc----ct-acccggttagctatttaaatgtcatcccatcagacggttaaact 103  Q
    |||||| |||||||||||| ||||||||||||||    || | ||| ||||||||||||| |||||||||||||||| |||||||    
T  29148798 gttggaacatttagctaagtccaatgagaggtcctgccctcagccgtttagctatttaaacgtcatcccatcagacgtttaaact 29148714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 40771315 - 40771349
Alignment:
Q  66 ttagctatttaaatgtcatcccatcagacggttaa 100  Q
    ||||||||||||| |||||||||||||||||||||    
T  40771315 ttagctatttaaacgtcatcccatcagacggttaa 40771349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 27101564 - 27101716
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 122  Q
    ||||||| |||||||||||||| |||||| |||      | |||||||||||||  | ||||||||||||||||||||||||||||||||||  ||| ||    
T  27101564 catttagttaagcccaatgagatgtccctgccctcagtcgtttagctatttaaactttatcccatcagacggttaaactactctgaacattctggtgtta 27101663  T
Q  123 aacggaatgaggatagtcatccctctcattcttctgatggttattcttcatca 175  Q
    |||||||||||| |||||||||||||||| ||||||||  |||| ||||||||    
T  27101664 aacggaatgagggtagtcatccctctcatccttctgataattatccttcatca 27101716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 27143386 - 27143538
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 122  Q
    ||||||| |||||||||||||| |||||| |||      | |||||||||||||  | ||||||||||||||||||||||||||||||||||  ||| ||    
T  27143386 catttagttaagcccaatgagatgtccctgccctcagtcgtttagctatttaaactttatcccatcagacggttaaactactctgaacattctggtgtta 27143485  T
Q  123 aacggaatgaggatagtcatccctctcattcttctgatggttattcttcatca 175  Q
    |||||||||||| |||||||||||||||| ||||||||  |||| ||||||||    
T  27143486 aacggaatgagggtagtcatccctctcatccttctgataattatccttcatca 27143538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 9972836 - 9972972
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactct---gaacattc--gtg 119  Q
    ||||||||||||||||||||||||||||| |||      | ||||||||||||| || |||||||||||||||||||||| |||   ||||||||  |||    
T  9972836 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgttatcccatcagacggttaaactattcttctgaacattctggtg 9972935  T
Q  120 ctaaacggaatgaggatagtcatccctctcattcttc 156  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  9972936 ctaaacggaatgagggtagtcatccctctcatccttc 9972972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 23848646 - 23848518
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc--gtgcta 122  Q
    ||||||||||||||||||||||||||||| |||      | ||||||||||||| |||||||||||||| |||||||||| |||||||||||  ||||||    
T  23848646 catttagctaagcccaatgagaggtccctgcccttagccgtttagctatttaaacgtcatcccatcagatggttaaactattctgaacattctggtgcta 23848547  T
Q  123 aacggaatgaggatagtcatccctctcat 151  Q
    || ||||||||   |||||||||||||||    
T  23848546 aagggaatgagcgcagtcatccctctcat 23848518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 32932346 - 32932257
Alignment:
Q  70 ctatttaaatgtcatcccatcagacggttaaactactctgaaca--ttcgtgctaaacggaatgaggatagtcatccctctcattcttct 157  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||| ||||||||||||||||||||||    
T  32932346 ctatttaaacgtcatcccatcagacggttaaactactatgaacattttggtgctaaatggaatgagggtagtcatccctctcattcttct 32932257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 18338175 - 18338305
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-----gtg 119  Q
    ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||||||| | |||||| ||||     |||    
T  18338175 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaccattctgaa-attcttctggtg 18338273  T
Q  120 ctaaacggaatgaggatagtcatccctctcat 151  Q
    ||||||||||||||| ||||||||||||||||    
T  18338274 ctaaacggaatgagggtagtcatccctctcat 18338305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 7553500 - 7553362
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacatt-- 115  Q
    |||||| ||||||||||| |||| ||||| |||||| |||      | |||| ||||||||  |||||||||||||||||||||||| ||||||||||      
T  7553500 gttggaccatttagctaaacccagtgagaagtccctgccctcggccgtttagttatttaaacatcatcccatcagacggttaaactattctgaacatttt 7553401  T
Q  116 ---cgtgctaaacggaatgaggatagtcatccctctcat 151  Q
        |||||||||||||||||| ||||||||||||||||    
T  7553400 tcaggtgctaaacggaatgagggtagtcatccctctcat 7553362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 22958160 - 22958071
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggtt-aaactactctgaaca 113  Q
    ||||||| |||||||||||||| |||||| |||      | ||||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  22958160 catttagttaagcccaatgagaagtccctgccctcagccgattagctatttaaacgtcatcccatcagatggttaaaactattctgaaca 22958071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 23830232 - 23830321
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggtt-aaactactctgaaca 113  Q
    ||||||| |||||||||||||| |||||| |||      | ||||||||||||| |||||||||||||| |||| |||||| ||||||||    
T  23830232 catttagttaagcccaatgagaagtccctgccctcagccgattagctatttaaacgtcatcccatcagatggttaaaactattctgaaca 23830321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 22729888 - 22730023
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc- 116  Q
    |||||| |||||||||||| |||||||||||||||| |||      | ||||||||||||| ||||||||||| || |||||||||| |||||||||||     
T  22729888 gttggaccatttagctaagtccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcggaaggttaaactattctgaacattct 22729987  T
Q  117 -gtgctaaacggaatgaggatagtcatccctctcat 151  Q
     |||||||||||||||||| || |||||||||||||    
T  22729988 ggtgctaaacggaatgagggtaatcatccctctcat 22730023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 11339880 - 11340061
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 117  Q
    |||||| ||||||||||| ||||||||||||||||| |||      | |||||||||||||  ||||| ||||||| |||||||||| |   |||| ||     
T  11339880 gttggaccatttagctaaacccaatgagaggtccctgccctcagccgtttagctatttaaacatcatcgcatcagaaggttaaactattgcaaacactct 11339979  T
Q  118 --tgctaaacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtatacaatt 198  Q
      ||||||||||||||||| |||||||||||||||| ||||| || ||||| ||||||||| |||||| ||||||| ||||||    
T  11339980 gctgctaaacggaatgagg-tagtcatccctctcatccttcttatagttatccttcatcaacctaatttaaaagtacacaatt 11340061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 156
Target Start/End: Complemental strand, 35941202 - 35941063
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattcg 117  Q
    |||||| ||||| ||||||||||||||||||||||| |||      | ||||||||||||| ||||| | ||||||||||||||||| |||||||||||     
T  35941202 gttggaccatttcgctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcattc-atcagacggttaaactattctgaacattct 35941104  T
Q  118 --tgctaaacggaatgaggatagtcatccctctcattcttc 156  Q
      ||||||||||||||||| ||||||||||| |||| ||||    
T  35941103 gatgctaaacggaatgagggtagtcatccctatcatccttc 35941063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 43097500 - 43097585
Alignment:
Q  23 agttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaac 102  Q
    ||||||| |||||||||||||||||||| |||||||| |||      | |||||||||||||||||||||||||||||||||||||    
T  43097500 agttggaccatttagctaagcccaatgaaaggtccctgccctcagccgtttagctatttaaatgtcatcccatcagacggttaaac 43097585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 36950216 - 36950181
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccct 59  Q
    |||||| |||||||||||||||||||||||||||||    
T  36950216 gttggaccatttagctaagcccaatgagaggtccct 36950181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 36950123 - 36950068
Alignment:
Q  106 tctgaacattc--gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
    |||||||||||  |||||| ||| ||||||| |||||||||||||||| |||||||    
T  36950123 tctgaacattctggtgctagacgaaatgagggtagtcatccctctcatccttctga 36950068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 42567731 - 42567597
Alignment:
Q  23 agttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc 116  Q
    ||||||| ||||||||||||||||||||||||||||| |||      | ||| ||||||||| ||||||||||||||||||||||||| | |||||||||    
T  42567731 agttggaccatttagctaagcccaatgagaggtccctgccctcagctgtttaactatttaaacgtcatcccatcagacggttaaactattatgaacattc 42567632  T
Q  117 --gtgctaaacggaatgaggatagtcatccctctca 150  Q
      ||||||||| |||||||| |||||||||||||||    
T  42567631 tggtgctaaac-gaatgagggtagtcatccctctca 42567597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 24423289 - 24423153
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggtt-aaactactctgaacattc 116  Q
    |||||| |||||| |||||||||||||||||||||| |||      | |||||||||||||||||||| |||||||||||| |||||| |||||||||||    
T  24423289 gttggaccatttaactaagcccaatgagaggtcccttccctcagtcgtttagctatttaaatgtcatctcatcagacggttaaaactattctgaacattc 24423190  T
Q  117 --gtgctaaacggaatgaggatagtcatccctctcat 151  Q
      |||||||||||||||||| |||| || ||||||||    
T  24423189 tggtgctaaacggaatgagggtagttattcctctcat 24423153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 35905066 - 35904976
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacatt 115  Q
    |||||||||||||||||||||||||| || |||      | ||||||||||||| |||||| |||||||| ||||||||| ||||||||||    
T  35905066 catttagctaagcccaatgagaggtctctgcccttagccgtttagctatttaaacgtcatctcatcagacagttaaactattctgaacatt 35904976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 33366813 - 33366885
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccct------acccggttagctatttaaatgtcatcccatc 90  Q
    |||||| |||||||||||||||||||||||||||||      | ||| ||||||||||||| |||||||||||    
T  33366813 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatc 33366885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 2229029 - 2229113
Alignment:
Q  123 aacggaatgaggatagtcatccctctcattcttctgatggttattcttcatcaatctaattcaaaagtatacaattccttattcc 207  Q
    |||||||||||| |||| |||||||||||  |   || |||||||||||||||| |||||| ||| |||||||||| ||| ||||    
T  2229029 aacggaatgagggtagttatccctctcatattgtcgacggttattcttcatcaacctaattgaaaggtatacaatttcttcttcc 2229113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 36048945 - 36049027
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccct------acccggttagctatttaaatgtcatcccatcagacggttaa 100  Q
    |||||| |||||||||||||||||||||||||| ||      | ||| ||||||||||||| |||||||||||| ||| ||||    
T  36048945 gttggaccatttagctaagcccaatgagaggtctctgccctcagccgtttagctatttaaacgtcatcccatcatacgattaa 36049027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 54256361 - 54256396
Alignment:
Q  66 ttagctatttaaatgtcatcccatcagacggttaaa 101  Q
    ||||||||||||| ||||||||||||||||||||||    
T  54256361 ttagctatttaaacgtcatcccatcagacggttaaa 54256396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 13393761 - 13393727
Alignment:
Q  23 agttggatcatttagctaagcccaatgagaggtcc 57  Q
    ||||||| |||||||||||||||||||||||||||    
T  13393761 agttggaccatttagctaagcccaatgagaggtcc 13393727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 13396900 - 13396866
Alignment:
Q  23 agttggatcatttagctaagcccaatgagaggtcc 57  Q
    ||||||| |||||||||||||||||||||||||||    
T  13396900 agttggaccatttagctaagcccaatgagaggtcc 13396866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 33361763 - 33361805
Alignment:
Q  117 gtgctaaacggaatgaggatagtcatccctctcattcttctga 159  Q
    |||||| ||||||||||| |||||||||||||||| |||||||    
T  33361763 gtgctacacggaatgagggtagtcatccctctcatccttctga 33361805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 8999 - 9129
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-----gtg 119  Q
    ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||||||| | |||||| ||||     |||    
T  8999 catttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaaccattctgaa-attcttctggtg 9097  T
Q  120 ctaaacggaatgaggatagtcatccctctcat 151  Q
    ||||||||||||||| ||||||||||||||||    
T  9098 ctaaacggaatgagggtagtcatccctctcat 9129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 4299 - 4429
Alignment:
Q  31 catttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaacattc-----gtg 119  Q
    ||||||||||||||||||||||||||||| |||      | | ||||||||||| ||||||||||||||||||||||| | |||||| ||||     |||    
T  4299 catttagctaagcccaatgagaggtccctgccctcaaccgttcagctatttaaacgtcatcccatcagacggttaaaccattctgaa-attcttctggtg 4397  T
Q  120 ctaaacggaatgaggatagtcatccctctcat 151  Q
    ||||||||||||||| ||||||||||||||||    
T  4398 ctaaacggaatgagggtagtcatccctctcat 4429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 60354 - 60500
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 116  Q
    |||||| ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||||||||| |||||||  |||    
T  60354 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaactattctgaactcttc 60453  T
Q  117 --gtgct--aaacggaatgaggatagtcatccctctcattcttctga 159  Q
      |||||  | ||||||||||| || ||||||||||||| |||||||    
T  60454 tggtgctacacacggaatgagggtactcatccctctcatccttctga 60500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 67830 - 67976
Alignment:
Q  24 gttggatcatttagctaagcccaatgagaggtccctaccc------ggttagctatttaaatgtcatcccatcagacggttaaactactctgaac-attc 116  Q
    |||||| ||||||||||||||||||||||||||||| |||      | ||||||||||||| ||||||||||||||||||||||||| |||||||  |||    
T  67830 gttggaccatttagctaagcccaatgagaggtccctgccctcagccgtttagctatttaaacgtcatcccatcagacggttaaactattctgaactcttc 67929  T
Q  117 --gtgct--aaacggaatgaggatagtcatccctctcattcttctga 159  Q
      |||||  | ||||||||||| || ||||||||||||| |||||||    
T  67930 tggtgctacacacggaatgagggtactcatccctctcatccttctga 67976  T

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