View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_458 (Length: 242)
Name: NF10954A_low_458
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_458 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 19601262 - 19601489
Alignment:
| Q |
8 |
gaataatataagataagtgataaattataatggttgacgacgctaatnnnnnnnnnnttcatgccacaccagtagcaatgtctgtgattatagtagccgc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |
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| T |
19601262 |
gaataatataagataagtgataaattataatggttgacgacgctaataaaaaataaatgcatgccacaccagtagcaatgtctgtgattgtagtagccgc |
19601361 |
T |
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| Q |
108 |
atttgcaaccaaaatttaaaaccctgtttgatattagctacacaaactcctcaccctagacaaatccttggggcttgatggacttgatagcttatgtgaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19601362 |
atttgcaaccaaaatttaaaaccctgtttgatattagctacacaaactcctcaccctagacaaatccttggggcttgatggacttgatagcttatgtgaa |
19601461 |
T |
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| Q |
208 |
tttataatagggaaaattacactcgcct |
235 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
19601462 |
tttataatagggaaaattacactcgcct |
19601489 |
T |
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