View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_459 (Length: 242)
Name: NF10954A_low_459
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_459 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 7779385 - 7779307
Alignment:
| Q |
1 |
tgttgttggggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttatgtaag |
79 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7779385 |
tgttgttggggattgttgatatttcgacaaggtaatcaatagaatttattttgtcaataattaggctaggttaggtaag |
7779307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 7779214 - 7779169
Alignment:
| Q |
172 |
cacgtccttctatcctcacttttaattgtgttaacacatagctccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7779214 |
cacgtccttctatcctcacttttaattgtgttaacaaatagctccc |
7779169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 25664784 - 25664714
Alignment:
| Q |
9 |
gggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttatgtaag |
79 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||| |||||||||| ||||||||| ||||||| ||||| |
|
|
| T |
25664784 |
gggattgttgatatttcgacaaggtaatcggtagaatttattttgtgaataattagcttaggttaggtaag |
25664714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 13581781 - 13581716
Alignment:
| Q |
9 |
gggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttat |
74 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||| |||||||||| |||||||||| ||| |||| |
|
|
| T |
13581781 |
gggattgttgatatttcgaaaagttaatcaatagaatttattttgtgaataattaggttagtttat |
13581716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University