View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_460 (Length: 241)
Name: NF10954A_low_460
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_460 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 26632171 - 26632402
Alignment:
| Q |
10 |
aagaatattcaggcaaggaaaaggaagcaaaatttagagagaatttagagagaaaatggtttcaatgtacttcattcatgctgaaagctactagtacaat |
109 |
Q |
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| T |
26632171 |
aagaatattcaggcaaggaaaaggaagcaaaatttagagagaatttagagagaaaatggtttcaatgtacttcattcatgctgaaaactactagtacaat |
26632270 |
T |
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| Q |
110 |
gaacaaatcaacaagttatatagggtaaaggcatacaagactaactgactaacaaactacacaagggaagaaattaacagtaaaagacatcataataatt |
209 |
Q |
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| T |
26632271 |
gaacaaatcaacatgttatatagggtaaaggcatacatgactaactgaataacaaactacacaggggtagaaattaacagtaaaagacatcataataatt |
26632370 |
T |
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| Q |
210 |
attgaaagttactcttcacacttatgaaatcg |
241 |
Q |
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| T |
26632371 |
attgaaagttactcttcacacttatgaaatcg |
26632402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 26640057 - 26640217
Alignment:
| Q |
51 |
aatttagagagaaaatggtttcaatgtacttcattcatgctgaaagctactagtacaatgaacaaatcaacaagttatatagggtaaaggcatacaagac |
150 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26640057 |
aatttagaga-aaaatggtttcaatgtacttcattcatgctgaaaactactagtacaatgaacaaatcaacaagttatatagggtaaaggcacacaagaa |
26640155 |
T |
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| Q |
151 |
taactgactaacaaactacacaagggaagaaattaacagtaaaagacatcataataattatt |
212 |
Q |
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| T |
26640156 |
tagctgaataacaaactacagaagggtagtaattaacagtaaaaggaatcctaattattatt |
26640217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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