View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_462 (Length: 241)
Name: NF10954A_low_462
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_462 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31025379 - 31025618
Alignment:
| Q |
1 |
atacacctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattgaaatattagttaaaattctaatattaaacgatatt |
100 |
Q |
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| T |
31025379 |
atactcctcttgttctatctataagagatatttgcgtcaataaaagtaactacatatactgattcaaatattagttaaaattctaatattaaacgatatt |
31025478 |
T |
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| Q |
101 |
tattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagtac----atttattttatg |
196 |
Q |
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| T |
31025479 |
tattagtatatcaaatgcaacattgctacgaggaatatgtgaacaaactcatatcgctaaaaattgattgaaagtttttagtacattaatttattttatg |
31025578 |
T |
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| Q |
197 |
aaaagttctaaattgagaattaaaataaagggttaattgt |
236 |
Q |
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| T |
31025579 |
aaaagttctaaattgagaattaaaataaagggttaattgt |
31025618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 31073711 - 31073784
Alignment:
| Q |
161 |
aaattgattgaatgcttttagtacatttattttatgaaaagttctaaattgagaattaaaataaagggttaatt |
234 |
Q |
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| T |
31073711 |
aaattgattgaatgcttttagcatatttattttatgaaaagttataaattaagaattataataattggttaatt |
31073784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 31040719 - 31040751
Alignment:
| Q |
190 |
ttttatgaaaagttctaaattgagaattaaaat |
222 |
Q |
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| T |
31040719 |
ttttatgaaaagttctaaattgagaattaaaat |
31040751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 33533813 - 33533958
Alignment:
| Q |
91 |
aaacgatatttattagtatatcaaatgcaacattgctatgaggaatctctgaacaaactcacatcactaaaaattgattgaatgcttttagtacatttat |
190 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||| | || ||||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
33533813 |
aaacgatatttattagtatatcaaatgcaacatttttatgatgaatatgtgtacaaactcatatcgttaaaatttgattgaatgcttttagtacatttat |
33533912 |
T |
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| Q |
191 |
tttatgaaaagttctaaattgagaattaaaataaagggttaattgt |
236 |
Q |
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| T |
33533913 |
tttatgaaaagtcctaaattgaaatttaaaatatgtggttaattgt |
33533958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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