View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_464 (Length: 241)
Name: NF10954A_low_464
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_464 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12122396 - 12122166
Alignment:
| Q |
1 |
ggtctacacccccaccttatcttagaagatatcgtctccaattacaccaacgccgctgtcgtcgacatcaagattggttctcgaacatggcaccctcaat |
100 |
Q |
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| T |
12122396 |
ggtctacacccccaccttatcttagaagatattgtctccaattacaccaacgccgctgtcgtcgacatcaagattggttctcgaacatggcaacctcaat |
12122297 |
T |
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| Q |
101 |
cctccgaagattacattcggaaatgcctccagaaagatcgagaatcttctacgataaaattagggtttagaatctctgggttgaggtctgtgggtcccag |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122296 |
cctccgaagattatattcggaaatgcctccagaaagatcgagaatcttctacgataaaattagggtttagaatctctgggttgaggtctgtgggtcccag |
12122197 |
T |
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| Q |
201 |
taacaaattatggcagcctcatagaaagctt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12122196 |
taacaaattatggcagcctcatagaaagctt |
12122166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 14691915 - 14691688
Alignment:
| Q |
1 |
ggtctacacccccaccttatcttagaagatatcgtctccaattacaccaacgccgctgtcgtcgacatcaagattggttctcgaacatggcaccctcaat |
100 |
Q |
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||||||||||||||||| |||||||||| || ||| ||||||||||||| | || ||||||||||||||||| ||||| |||||||||||||| || | |
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| T |
14691915 |
ggtctacacccccacctcgtcttagaagacattgtcagcaattacaccaaccctgccgtcgtcgacatcaagatcggttcacgaacatggcacccacagt |
14691816 |
T |
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| Q |
101 |
cctccgaagattacattcggaaatgcctccagaaagatcgagaatcttctacgataaaattagggtttagaatctctgggttgaggtctgtgggtcccag |
200 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || |||||||| |||||||||| |
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| T |
14691815 |
cctctgaagattacatccggaaatgcctccagaaagatcgagaatcttctagtatcaaattagggtttagaatctccggtttgaggtcagtgggtcccac |
14691716 |
T |
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| Q |
201 |
taacaaattatggcagcctcatagaaag |
228 |
Q |
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||| |||||||||||||||||| |||| |
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| T |
14691715 |
taatcaattatggcagcctcataaaaag |
14691688 |
T |
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