View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_47 (Length: 420)
Name: NF10954A_low_47
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_47 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 37765842 - 37766244
Alignment:
| Q |
10 |
ggtgttggactggaaactgagttaccaaattgctattggaattgcaaggggattaacatacctccacgagaagtgccgagactgtatcatacactgcgat |
109 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
37765842 |
ggtgttggactggaaactgagataccaaattgctattggaattgcaaggggattaacatacctccacgagaagtgccgagactgtatcatacactgtgat |
37765941 |
T |
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| Q |
110 |
gtaaagccagaaaacattctcctagacaccgatttttgtcctaaagttgcagactttggcctggccgcgggctggtcggacgagatttcagcagggtcct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
37765942 |
gtaaagccagaaaacattctcctagacaccgatttttgtcctaaagttgcagactttggcctggctaag--ctggtcggacgagatttcagcagggtcct |
37766039 |
T |
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| Q |
210 |
aacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatgcttatagctacggaatgatgctt |
309 |
Q |
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| T |
37766040 |
aacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagctgatgtttatagctacggaatgatgctt |
37766139 |
T |
|
| Q |
310 |
ttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagctactttctttcctaccttagctgcaaaagtagttatagaaggtggaa |
409 |
Q |
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| T |
37766140 |
ttcgaggttgtatcgggtaggaggaactccgatccatcagaagatggtcaagttactttctttcctaccttagctgcaaaagtagttatagaaggtggaa |
37766239 |
T |
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| Q |
410 |
gtgtc |
414 |
Q |
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||||| |
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| T |
37766240 |
gtgtc |
37766244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 10 - 397
Target Start/End: Complemental strand, 37799904 - 37799519
Alignment:
| Q |
10 |
ggtgttggactggaaactgagttaccaaattgctattggaattgcaaggggattaacatacctccacgagaagtgccgagactgtatcatacactgcgat |
109 |
Q |
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|||||||| |||||| |||| |||||||||||| |||||||||| || ||| ||| ||||| |||||||| ||| ||| |||||||||||||| ||| |
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| T |
37799904 |
ggtgttgggttggaaaatgagataccaaattgctcttggaattgctagaggactaatttacctacacgagaaatgcgaagaatgtatcatacactgtgat |
37799805 |
T |
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| Q |
110 |
gtaaagccagaaaacattctcctagacaccgatttttgtcctaaagttgcagactttggcctggccgcgggctggtcggacgagatttcagcagggtcct |
209 |
Q |
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| T |
37799804 |
ataaagccagaaaacattctccttgatgctgatttttgtccaaaagttgcagactttggtgtagc--taagttaattggacgagatttcagaagaatcct |
37799707 |
T |
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| Q |
210 |
aacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatgcttatagctacggaatgatgctt |
309 |
Q |
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|||| |||| |||| |||||||||| ||| | || |||||||| ||| | | ||||| ||||||||| | |||| ||| || || |||||||||||| |
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| T |
37799706 |
tacaaacatggaaggatcaagaggctatctttccccagagtggatatctagggctgctatcacagccaaatctgatgtttacagttatggaatgatgctt |
37799607 |
T |
|
| Q |
310 |
ttcgaggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagctactttctttcctaccttagctgcaaaagtagtta |
397 |
Q |
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| T |
37799606 |
tttgaggttgtatcaggtaaaaggaattctgatccatctgcagatgaccaaaatactttctttccaaccttggctgctacagtagtta |
37799519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 16034 - 16407
Alignment:
| Q |
14 |
ttggactggaaactgagttaccaaattgctattggaattgcaaggggattaacatacctccacgagaagtgccgagactgtatcatacactgcgatgtaa |
113 |
Q |
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||||| |||||| | || |||||||||||| | ||||| || |||||||| ||||| || || || ||||| ||||||||||||| |||||||| || | |
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| T |
16034 |
ttggagtggaaagtaagataccaaattgctctgggaatagctaggggattgacatatcttcatgaaaagtgtagagactgtatcattcactgcgacgtga |
16133 |
T |
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| Q |
114 |
agccagaaaacattctcctagacaccgatttttgtcctaaagttgcagactttggcctggccgcgggctggtcggacgagatttcagcagggtcctaaca |
213 |
Q |
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||||||||||||||||| |||| | ||||||||||| |||||||||||||| ||||| || | || |||||| | || |||||| ||||||| || |
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| T |
16134 |
agccagaaaacattctcatagattctgatttttgtccaaaagttgcagacttcggccttgcaaag--cttgtcggaagggacttcagccgggtcctcact |
16231 |
T |
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| Q |
214 |
accatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaagccgatgcttatagctacggaatgatgcttttcg |
313 |
Q |
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||||||||||||||||||||||| || ||||| ||||||||||| || || ||||| || || |||||||||| ||| |||||||||||||||||||||| |
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| T |
16232 |
accatgagaggaacaagaggctatctagctccagagtggatttcaggagttgctataaccgctaaagccgatgtttacagctacggaatgatgcttttcg |
16331 |
T |
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| Q |
314 |
aggttgtatcaggtaggaggaactccgatccttcagaagatggtcaagctactttctttcctaccttagctgcaaa |
389 |
Q |
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| T |
16332 |
agctagtgtcaggtagaagaaactccgatccttctgaagatggccatgttagattctttcctaccttagctgcaaa |
16407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 347
Target Start/End: Original strand, 38388077 - 38388212
Alignment:
| Q |
215 |
ccatgagaggaacaagaggctaccttgctccgga---gtggatttctggcgtggctattacagccaaagccgatgcttatagctacggaatgatgctttt |
311 |
Q |
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|||||||||||||||||||||| || ||||| || ||||||||| || || |||| || || |||||||||| ||| | |||| ||||||||||||| |
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| T |
38388077 |
ccatgagaggaacaagaggctatctagctccagatgagtggatttcgggagtttctataaccgctaaagccgatgtttacaactacagaatgatgctttt |
38388176 |
T |
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| Q |
312 |
cgaggttgtatcaggtaggaggaactccgatccttc |
347 |
Q |
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|||| | || ||||| || || ||||| |||||||| |
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| T |
38388177 |
cgagctcgtgtcaggaagaagaaactctgatccttc |
38388212 |
T |
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