View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_472 (Length: 241)

Name: NF10954A_low_472
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_472
NF10954A_low_472
[»] chr2 (11 HSPs)
chr2 (1-226)||(45726305-45726527)
chr2 (125-223)||(39284516-39284615)
chr2 (124-226)||(35447548-35447650)
chr2 (124-226)||(17863811-17863913)
chr2 (116-159)||(1632370-1632413)
chr2 (147-226)||(14698547-14698626)
chr2 (125-226)||(23077987-23078088)
chr2 (179-226)||(29867553-29867600)
chr2 (179-226)||(34389331-34389378)
chr2 (125-226)||(10706768-10706869)
chr2 (182-226)||(2837291-2837335)
[»] chr3 (20 HSPs)
chr3 (89-211)||(31340723-31340845)
chr3 (84-226)||(46173095-46173237)
chr3 (123-226)||(29812680-29812784)
chr3 (83-159)||(34490592-34490668)
chr3 (125-223)||(51398445-51398544)
chr3 (84-226)||(54593065-54593207)
chr3 (124-226)||(4569352-4569454)
chr3 (123-208)||(29810485-29810571)
chr3 (113-159)||(44331176-44331222)
chr3 (119-159)||(30235614-30235654)
chr3 (124-223)||(36018262-36018362)
chr3 (125-223)||(21711685-21711783)
chr3 (119-160)||(47303761-47303802)
chr3 (147-226)||(6096265-6096345)
chr3 (124-207)||(55302648-55302731)
chr3 (125-226)||(49200116-49200218)
chr3 (151-226)||(8127110-8127186)
chr3 (125-226)||(39032060-39032161)
chr3 (125-226)||(27038522-27038623)
chr3 (147-226)||(1735832-1735910)
[»] chr4 (17 HSPs)
chr4 (84-226)||(26363626-26363768)
chr4 (97-226)||(54882413-54882543)
chr4 (122-226)||(9927908-9928012)
chr4 (122-226)||(12745864-12745967)
chr4 (84-160)||(50263418-50263494)
chr4 (122-211)||(12740001-12740089)
chr4 (122-211)||(12748207-12748295)
chr4 (125-226)||(6655357-6655459)
chr4 (83-160)||(50674577-50674654)
chr4 (125-207)||(18377838-18377920)
chr4 (119-159)||(8653109-8653149)
chr4 (119-159)||(8664916-8664956)
chr4 (179-226)||(52095808-52095855)
chr4 (148-226)||(16628411-16628488)
chr4 (123-161)||(34570917-34570955)
chr4 (91-139)||(24968696-24968745)
chr4 (122-226)||(3754630-3754733)
[»] chr6 (2 HSPs)
chr6 (115-226)||(21593058-21593169)
chr6 (125-160)||(33160847-33160882)
[»] chr7 (21 HSPs)
chr7 (97-208)||(34311285-34311396)
chr7 (84-226)||(2389653-2389795)
chr7 (123-226)||(47674390-47674494)
chr7 (123-226)||(47676583-47676687)
chr7 (124-226)||(14070281-14070383)
chr7 (124-226)||(14380309-14380411)
chr7 (122-222)||(4585778-4585878)
chr7 (125-211)||(27347543-27347630)
chr7 (113-156)||(48491207-48491250)
chr7 (147-223)||(32358504-32358580)
chr7 (186-226)||(26416994-26417034)
chr7 (179-226)||(23554713-23554760)
chr7 (83-121)||(4513066-4513104)
chr7 (129-210)||(18126268-18126349)
chr7 (113-159)||(48489039-48489084)
chr7 (83-171)||(4509323-4509412)
chr7 (83-171)||(4511165-4511254)
chr7 (83-171)||(6431424-6431513)
chr7 (83-160)||(6570170-6570247)
chr7 (182-226)||(6360577-6360621)
chr7 (147-226)||(33331987-33332067)
[»] chr5 (11 HSPs)
chr5 (83-226)||(40146627-40146770)
chr5 (126-226)||(42428865-42428966)
chr5 (122-226)||(32636441-32636544)
chr5 (126-223)||(42426685-42426783)
chr5 (147-226)||(212986-213065)
chr5 (124-223)||(5057450-5057549)
chr5 (124-226)||(37438764-37438866)
chr5 (91-139)||(42310463-42310512)
chr5 (94-139)||(42926502-42926548)
chr5 (111-140)||(212969-212998)
chr5 (125-226)||(12083693-12083794)
[»] chr8 (11 HSPs)
chr8 (125-226)||(15212405-15212507)
chr8 (123-211)||(33351788-33351877)
chr8 (124-226)||(11383405-11383509)
chr8 (147-226)||(22975958-22976037)
chr8 (113-159)||(4731266-4731312)
chr8 (114-159)||(4733434-4733479)
chr8 (83-160)||(40220132-40220209)
chr8 (168-226)||(30143005-30143063)
chr8 (107-176)||(3051631-3051700)
chr8 (147-226)||(42435656-42435736)
chr8 (182-226)||(27810975-27811019)
[»] chr1 (6 HSPs)
chr1 (97-210)||(192985-193099)
chr1 (125-226)||(28220674-28220776)
chr1 (122-208)||(30476892-30476978)
chr1 (125-226)||(28223869-28223971)
chr1 (115-159)||(42298593-42298637)
chr1 (84-139)||(29135698-29135753)
[»] scaffold0466 (1 HSPs)
scaffold0466 (124-208)||(6749-6833)
[»] scaffold0014 (1 HSPs)
scaffold0014 (124-226)||(80948-81050)
[»] scaffold0286 (1 HSPs)
scaffold0286 (125-226)||(10959-11061)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45726305 - 45726527
Alignment:
Q  1 tgtacaatactgcatgcagagaagcacttgcagcacaacacaaggtatgtattatttataatagacatgttactaattgttgttgttgagatgtgactca 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||| |    
T  45726305 tgtacaatactgcgtgcagagaagcacttgcagcacaacacaaggtatgtattatttataatagacatgttactaattgt---tgttgagaggtgactga 45726401  T
Q  101 aaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgac 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  45726402 aaaatggattttgagaaagtgaagaaacgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgattttcagggtgtccaattgtgac 45726501  T
Q  201 acgattttgggtaaatgtgacacgat 226  Q
    ||||||||||| ||||||||||||||    
T  45726502 acgattttgggcaaatgtgacacgat 45726527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 39284516 - 39284615
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactt-tcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||  ||||||||||  | |||||||||||||||| ||| |||||||    
T  39284516 aatcgtgacacgaattggcaaacgtgtcacgattttctaggcagtgagcatggtttcgcagggtgtcctatcgtgacacgattttgggaaaacgtgacac 39284615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 35447650 - 35447548
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||| ||||| ||||  |||| ||||||| |||||||||||||||||||||   ||||||||||| || |||| ||||||||||||| |||||||||||    
T  35447650 gaatcatgacatgattacgcaagcgtgtcatgattttctaggcagtgagcattgttttcagggtgttcaattgtaacacgattttgggaaaatgtgacac 35447551  T
Q  224 gat 226  Q
    |||    
T  35447550 gat 35447548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 17863811 - 17863913
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||| |  | |||  |||||||||| ||||||||||||||  |||||||||||||| | ||||||  |||||||| ||| |||||||    
T  17863811 gaatcgtgacacgattttggcatcgtcgcacgattttcaaggcagtgagcatggttttcagggtgtccaatcgtgacataattttgggaaaacgtgacac 17863910  T
Q  224 gat 226  Q
    |||    
T  17863911 gat 17863913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 1632413 - 1632370
Alignment:
Q  116 aaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  1632413 aaagtgaagaatcgtgacacgttttggcaaccgtgtcacgattt 1632370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 14698547 - 14698626
Alignment:
Q  147 cgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||| ||| |||||||||||||||||||||| |||| || ||| |||| ||  |||||||||||| ||| ||||||||||    
T  14698547 cgtgacacaattttctaggcagtgagcatgattttctggatgttcattcgtatcacgattttgggaaaacgtgacacgat 14698626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 23077987 - 23078088
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacg 224  Q
    ||||||||||||||||    | ||||||||||||| | ||||||||||||||  ||  ||||||  || ||||| |||||||||||| ||| ||||||||    
T  23077987 aatcgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggattgtagggtgctcaattgtgtcacgattttgggaaaacgtgacacg 23078086  T
Q  225 at 226  Q
    ||    
T  23078087 at 23078088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 29867553 - 29867600
Alignment:
Q  179 tttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||| | |||||||||||||||| ||| ||||||||||    
T  29867553 tttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 29867600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 34389378 - 34389331
Alignment:
Q  179 tttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||| | |||||||||||||||| ||| ||||||||||    
T  34389378 tttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 34389331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 10706768 - 10706869
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactt-tcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||    | ||||||||||||||| |||||| |||||||  || ||||||||  || ||||| |||||||||||| ||| |||||||    
T  10706768 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatggtttctcagggtgctcaattgtgtcacgattttgggaaaacgtgacac 10706866  T
Q  224 gat 226  Q
    |||    
T  10706867 gat 10706869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 2837335 - 2837291
Alignment:
Q  182 cagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||||||| | |||||||||||||||| ||| ||||||||||    
T  2837335 cagggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 2837291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 31340845 - 31340723
Alignment:
Q  89 agatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  31340845 agatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatggttttcagggtg 31340746  T
Q  189 tccatttgtgacacgattttggg 211  Q
    |||| | |||||| |||||||||    
T  31340745 tccaatcgtgacatgattttggg 31340723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 46173095 - 46173237
Alignment:
Q  84 tgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttca 183  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||| | ||||||||||||||  || ||    
T  46173095 tgttgagatgtggctcaaaaatggattttgagaaagtgaagaatcgtgacatgaattggcaaacatgtcacgatttccaaggcagtgagcatggtttgca 46173194  T
Q  184 gggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||||| | |||||||||||||||| |||  |||||||||    
T  46173195 gggtgtccaatcgtgacacgattttgggaaaacatgacacgat 46173237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 29812680 - 29812784
Alignment:
Q  123 agaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    |||||||||||||||||| ||||  |||||||||||||||||||||||||||||  ||| ||||||||||| | |||||||||||||||| ||| |||||    
T  29812680 agaatcgtgacacgatttagcaagtgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgac 29812779  T
Q  222 acgat 226  Q
    |||||    
T  29812780 acgat 29812784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 34490592 - 34490668
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    ||||||||||||| |||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34490592 ttgttgagatgtggctcaaaaatgaaaattgagaaagtgaagaatcatgacacgatttggcaaccgtgtcacgattt 34490668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 125 - 223
Target Start/End: Original strand, 51398445 - 51398544
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    |||||| ||||||||||  || ||||||||||||||||||| ||||||||||  ||| ||||||||||| |||||||||||||||||| ||| |||||||    
T  51398445 aatcgtaacacgatttgctaagcgtgtcacgattttctaggtagtgagcatggttttgcagggtgtccaattgtgacacgattttgggaaaacgtgacac 51398544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 54593065 - 54593207
Alignment:
Q  84 tgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttca 183  Q
    |||||||||||||||||||||||| ||| || |||||  |||||| ||| |||||||   |||| || |||||||||||||||||||||||||  |||||    
T  54593065 tgttgagatgtgactcaaaaatggttttggaaaaagttcagaatcatgatacgatttatgaaccatggcacgattttctaggcagtgagcatggttttca 54593164  T
Q  184 gggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
     ||| | || | ||||| | |||||||| ||| ||||||||||    
T  54593165 tggtattcaatcgtgactcaattttgggaaaacgtgacacgat 54593207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 4569352 - 4569454
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||| |  | |||| ||| ||||||||||||||| |||||  ||| |||||||||| | |||||| ||||||||| ||| |||||||    
T  4569352 gaatcgtgacacgattttggcatcgtggcacaattttctaggcagtgcgcatggtttttagggtgtccaatcgtgacatgattttgggaaaacgtgacac 4569451  T
Q  224 gat 226  Q
    |||    
T  4569452 gat 4569454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 29810485 - 29810571
Alignment:
Q  123 agaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgatttt 208  Q
    |||||||||||| ||||| |||| |||||||| |||||||||||| ||||||||  ||| ||||||||||| | |||||||||||||    
T  29810485 agaatcgtgacatgatttagcaagcgtgtcacaattttctaggcattgagcatggttttgcagggtgtccaatcgtgacacgatttt 29810571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 44331176 - 44331222
Alignment:
Q  113 gagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  44331176 gagaaagtgaagaatcgtgacacgctttggcaaccgtgtcacgattt 44331222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 30235614 - 30235654
Alignment:
Q  119 gtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30235614 gtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 30235654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 36018262 - 36018362
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcat-gactttcagggtgtccatttgtgacacgattttgggtaaatgtgaca 222  Q
    ||||||||||||||||  |||| |||||||||||||||||||||||||||||    |||| |||||  || | |||||||||||||||| ||| ||||||    
T  36018262 gaatcgtgacacgattacgcaagcgtgtcacgattttctaggcagtgagcatattttttctgggtgctcaatcgtgacacgattttgggaaaacgtgaca 36018361  T
Q  223 c 223  Q
    |    
T  36018362 c 36018362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 21711783 - 21711685
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||    | ||||||||||||||| ||||||||||||||  ||||||||||  || | ||| |||||||||||| ||| |||||||    
T  21711783 aatcgtgacacgatttcttcaacgtgtcacgattttccaggcagtgagcatggttttcagggtgctcaatcgtgtcacgattttgggaaaacgtgacac 21711685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 47303761 - 47303802
Alignment:
Q  119 gtgaagaatcgtgacacgatttggcaaccgtgtcacgatttt 160  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  47303761 gtgaagaatcgtgacacgatttggcaaccgtgacacgatttt 47303802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 6096345 - 6096265
Alignment:
Q  147 cgtgtcacga-ttttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||| ||||  ||||| ||||||||  || ||||||||||| |||||||||||||||||| ||| ||||||||||    
T  6096345 cgtgtcacgaattttgaaggcactgagcatggtttgcagggtgtccaattgtgacacgattttgggaaaacgtgacacgat 6096265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 55302731 - 55302648
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattt 207  Q
    ||||||||||||||||| |  |  ||| ||||||||||||||||||||||||   ||||||||||| || | ||||||||||||    
T  55302731 gaatcgtgacacgattttggcattgtggcacgattttctaggcagtgagcattgttttcagggtgttcaatcgtgacacgattt 55302648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 49200218 - 49200116
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgatttt-ctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||  ||  |||||||||||||| | | || |||||||||  || ||||||||||| | |||||||||| ||||| ||| |||||||    
T  49200218 aatcgtgacacgattttacaggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgatgttggggaaacgtgacac 49200119  T
Q  224 gat 226  Q
    |||    
T  49200118 gat 49200116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 8127186 - 8127110
Alignment:
Q  151 tcacgattttctaggcagtgagcat-gactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||| |||||||||||||| | |||||||||||  || | ||| |||||||||||| || |||||||||||    
T  8127186 tcacgattttttaggcagtgagcatgggctttcagggtgctcaatcgtgtcacgattttgggaaagtgtgacacgat 8127110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 39032060 - 39032161
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactt-tcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||    | ||||||||||||||| |||||| |||||||  || ||||||||  || | ||| |||||||||||| |||||||||||    
T  39032060 aatcgtgacacgatttcatcaacgtgtcacgattttc-aggcagggagcatggtttctcagggtgctcaatcgtgtcacgattttgggaaaatgtgacac 39032158  T
Q  224 gat 226  Q
    |||    
T  39032159 gat 39032161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 27038623 - 27038522
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacg 224  Q
    ||||||||||||||||    | |||| |||||||| | ||||||||||||||  || |||||||  || |  || |||||||||||| ||||||||||||    
T  27038623 aatcgtgacacgatttcatcaacgtgacacgatttcccaggcagtgagcatggtttgcagggtgctcaatcatgtcacgattttgggaaaatgtgacacg 27038524  T
Q  225 at 226  Q
    ||    
T  27038523 at 27038522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 1735832 - 1735910
Alignment:
Q  147 cgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||||||||||| |||||||||||||| |||| |||||||  || | ||| |||||||||||| ||| ||||||||||    
T  1735832 cgtgtcacgattttc-aggcagtgagcatggcttttcagggtgctcaatcgtg-cacgattttgggaaaacgtgacacgat 1735910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 26363626 - 26363768
Alignment:
Q  84 tgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttca 183  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||   ||| |    
T  26363626 tgttgagatgtgactaaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccatgtcacgattttttaggcagtgaacattgttttta 26363725  T
Q  184 gggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||||| | |||||||||||||||| ||| ||||||||||    
T  26363726 gggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 26363768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 54882413 - 54882543
Alignment:
Q  97 ctcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacga-ttttctaggcagtgagcatgactttcagggtgtccattt 195  Q
    ||||||||||  ||| |||||||||||||| |||||||||||||||||| | |||||||| ||||  ||||||||||||||  || ||||||||||| |     
T  54882413 ctcaaaaatgattttggagaaagtgaagaaacgtgacacgatttggcaatcatgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatc 54882512  T
Q  196 gtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||||| ||| ||||||||||    
T  54882513 gtgacacgattttgggaaaacgtgacacgat 54882543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 9928012 - 9927908
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    |||||||||||||| ||||  ||| ||| ||||||||||||||||||||| ||||  || |||||||| || | |||||||||||||||| |||||||||    
T  9928012 aagaatcgtgacacaatttaacaagcgtatcacgattttctaggcagtgaacatgttttgcagggtgttcaatcgtgacacgattttgggaaaatgtgac 9927913  T
Q  222 acgat 226  Q
    |||||    
T  9927912 acgat 9927908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 12745967 - 12745864
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||  |  ||||||||||| | |||||| ||||||||| ||| |||||    
T  12745967 aagaatcgtgacacgatttagcaagcgtgacacgattttctaggcagtgagc-tgtttggcagggtgtccaatcgtgacatgattttgggaaaacgtgac 12745869  T
Q  222 acgat 226  Q
    |||||    
T  12745868 acgat 12745864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 50263494 - 50263418
Alignment:
Q  84 tgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttt 160  Q
    |||||||||||||||||||||||||||||||||||||    |||||||||||||||||  || | ||||||||||||    
T  50263494 tgttgagatgtgactcaaaaatggattttgagaaagttgcaaatcgtgacacgatttgctaagcatgtcacgatttt 50263418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 12740089 - 12740001
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttggg 211  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||  || |||||||||||   | ||||||||||||||    
T  12740089 aagaatcgtgacacgatttagcaaacgtgtcacgattttctaggcactgagc-tgttttgcagggtgtccaaccgcgacacgattttggg 12740001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 12748295 - 12748207
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttggg 211  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||  || |||||||||||   | ||||||||||||||    
T  12748295 aagaatcgtgacacgatttagcaaacgtgtcacgattttctaggcactgagc-tgttttgcagggtgtccaaccgcgacacgattttggg 12748207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 6655357 - 6655459
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgatttt-ctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||   |  |||||||||||||| | | || |||||||||  || ||||||||||| | |||||||||||||||| |||||||||||    
T  6655357 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacac 6655456  T
Q  224 gat 226  Q
    |||    
T  6655457 gat 6655459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 50674654 - 50674577
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttt 160  Q
    |||||||||| ||||||||||||||||| || |||||||   || |||||||||||||||  | ||||||||||||||    
T  50674654 ttgttgagatatgactcaaaaatggattgtgtgaaagtgccaaaacgtgacacgatttgggtaacgtgtcacgatttt 50674577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 207
Target Start/End: Complemental strand, 18377920 - 18377838
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattt 207  Q
    |||||||||||||||  |||| |||||||| ||||||| |||||  ||||||  |||| |||||| || ||||||||||||||    
T  18377920 aatcgtgacacgattatgcaagcgtgtcacaattttctcggcaggaagcatgtttttctgggtgttcaattgtgacacgattt 18377838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 8653109 - 8653149
Alignment:
Q  119 gtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  8653109 gtgaagaatcgtgacatgatttggcaaccgtgtcacaattt 8653149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 8664916 - 8664956
Alignment:
Q  119 gtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  8664916 gtgaagaatcgtgacatgatttggcaaccgtgtcacaattt 8664956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 52095855 - 52095808
Alignment:
Q  179 tttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||| | |||||||||||||||| ||| ||||||||||    
T  52095855 tttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 52095808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 16628411 - 16628488
Alignment:
Q  148 gtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||| ||||||||||||||  || |||||||  || | ||| |||||||||||| ||| ||||||||||    
T  16628411 gtgtcacgattttc-aggcagtgagcatgctttgcagggtgctcaatcgtgtcacgattttgggaaaacgtgacacgat 16628488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 34570955 - 34570917
Alignment:
Q  123 agaatcgtgacacgatttggcaaccgtgtcacgattttc 161  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  34570955 agaatcgtgacacgatttagcaagcgtgtcacgattttc 34570917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 24968696 - 24968745
Alignment:
Q  91 atgtgactcaaaaatggattttg-agaaagtgaagaatcgtgacacgatt 139  Q
    ||||||||||||||| || |||| | ||||||||||||||||||||||||    
T  24968696 atgtgactcaaaaattgagtttggataaagtgaagaatcgtgacacgatt 24968745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 3754630 - 3754733
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    |||||||||||||||||||  ||| | |||||||||||| ||| || ||||| ||  || |||||||| || |||| ||||||||||    |||||||||    
T  3754630 aagaatcgtgacacgatttaacaagcatgtcacgattttttagacaatgagc-tgttttgcagggtgtacaattgtaacacgattttaaaaaaatgtgac 3754728  T
Q  222 acgat 226  Q
    |||||    
T  3754729 acgat 3754733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 21593058 - 21593169
Alignment:
Q  115 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaa 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||  |||||||||||||| | ||||||| |||||||| ||    
T  21593058 gaaagtgaagaatcgtgacatgatttggcaaccgtgtcacgattttctaggtagtgagcatggttttcagggtgtccaatcgtgacacaattttgggaaa 21593157  T
Q  215 atgtgacacgat 226  Q
    | ||||||||||    
T  21593158 acgtgacacgat 21593169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 33160882 - 33160847
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgatttt 160  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33160882 aatcgtgacacgatttggcaagcgtgtcacgatttt 33160847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 34311396 - 34311285
Alignment:
Q  97 ctcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttg 196  Q
    |||||||||| |  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  || ||||||||||| |      
T  34311396 ctcaaaaatgaagattgagaaagtgaagaatcgtgacacgatttggcaaacgtgtcacgattttctaggcagtgagcatggtttgcagggtgtccaatca 34311297  T
Q  197 tgacacgatttt 208  Q
    ||||||||||||    
T  34311296 tgacacgatttt 34311285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 2389653 - 2389795
Alignment:
Q  84 tgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttca 183  Q
    |||||||||||||||||||||||| ||| |  |||||  | ||||||||||| ||||   ||||||| ||||||||||||| |||||||||||  ||| |    
T  2389653 tgttgagatgtgactcaaaaatggttttgggaaaagttcataatcgtgacacaatttatgaaccgtggcacgattttctagacagtgagcatggttttta 2389752  T
Q  184 gggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||||| | |||||||||||||| | ||||||||||||||    
T  2389753 gggtgtccaatcgtgacacgattttgagaaaatgtgacacgat 2389795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 47674494 - 47674390
Alignment:
Q  123 agaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    |||||||||||||||||| |||| | ||||||||||||| ||||||||||||||  ||| ||||||||||| | |||||||||||||||| ||| |||||    
T  47674494 agaatcgtgacacgatttagcaagcatgtcacgattttccaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgac 47674395  T
Q  222 acgat 226  Q
    |||||    
T  47674394 acgat 47674390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 47676687 - 47676583
Alignment:
Q  123 agaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    |||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||  ||| ||||||||||| | |||||||||||||||| ||| |||||    
T  47676687 agaatcatgacatgatttagcaagcgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgac 47676588  T
Q  222 acgat 226  Q
    |||||    
T  47676587 acgat 47676583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 14070383 - 14070281
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||| |  | |||| |||||||||| ||||||||||||||  ||||||||||| || | |||||||||||||||| ||| |||||||    
T  14070383 gaatcgtgacacgattttggcatcgtggcacgattttcaaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacac 14070284  T
Q  224 gat 226  Q
    |||    
T  14070283 gat 14070281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 14380411 - 14380309
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||| |  | |||| |||||||||| ||||||||||||||  ||||||||||| || | |||||||||||||||| ||| |||||||    
T  14380411 gaatcgtgacacgattttggcatcgtggcacgattttcaaggcagtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacac 14380312  T
Q  224 gat 226  Q
    |||    
T  14380311 gat 14380309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 4585778 - 4585878
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    |||||| ||||||| |||| ||||  |||||||||||||||||||||||||||||  || ||||||||||| | ||||||| |||||||| ||| |||||    
T  4585778 aagaattgtgacactatttagcaagtgtgtcacgattttctaggcagtgagcatgttttgcagggtgtccaatcgtgacactattttgggaaaacgtgac 4585877  T
Q  222 a 222  Q
    |    
T  4585878 a 4585878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 27347543 - 27347630
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagca-tgactttcagggtgtccatttgtgacacgattttggg 211  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||| ||  || ||||||| ||| | ||||||||||||||||    
T  27347543 aatcgtgacacgatttgctaagcgtgtcacgattttctaggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttggg 27347630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 156
Target Start/End: Original strand, 48491207 - 48491250
Alignment:
Q  113 gagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacga 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  48491207 gagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacga 48491250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 32358580 - 32358504
Alignment:
Q  147 cgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    |||| |||||||||||||||||||||||||  ||||||||| |||| | |||| ||||||||||| ||| |||||||    
T  32358580 cgtgacacgattttctaggcagtgagcatggttttcagggtatccaatcgtgatacgattttgggaaaacgtgacac 32358504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 26416994 - 26417034
Alignment:
Q  186 gtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  26416994 gtgtccaattgtgacacgattttggggaaatgtgacacgat 26417034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 23554713 - 23554760
Alignment:
Q  179 tttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||| | |||||||||||||||| ||| ||||||||||    
T  23554713 tttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 23554760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 4513104 - 4513066
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtg 121  Q
    |||||||||||||||||||||||| || |||||||||||    
T  4513104 ttgttgagatgtgactcaaaaatgaatattgagaaagtg 4513066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 18126268 - 18126349
Alignment:
Q  129 gtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgg 210  Q
    ||||||||| ||||||| ||||||| ||||||||||| |||||| |||  ||| ||||||||||| | ||| |||||||||||    
T  18126268 gtgacacgaattggcaaacgtgtcatgattttctaggtagtgagtatggttttgcagggtgtccaatcgtg-cacgattttgg 18126349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 48489039 - 48489084
Alignment:
Q  113 gagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    |||||||||||||| ||||||||| |||||||||||||||| |||||    
T  48489039 gagaaagtgaagaa-cgtgacacgttttggcaaccgtgtcatgattt 48489084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 4509412 - 4509323
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtg-aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtga 171  Q
    ||||||||||||| |||||||||| |  |||||||||||   ||||||||||||||||| |  | |||| |||||||||| |||| ||||    
T  4509412 ttgttgagatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgattttgggatcgtgacacgattttcaaggccgtga 4509323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 4511254 - 4511165
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtg-aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtga 171  Q
    ||||||||||||| |||||||||| |  |||||||||||   ||||||||||||||||| |  | |||| |||||||||| |||| ||||    
T  4511254 ttgttgagatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgattttgggatcgtgacacgattttcaaggccgtga 4511165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 171
Target Start/End: Original strand, 6431424 - 6431513
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtg-aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtga 171  Q
    ||||||||||||| |||||||||| |  |||||||||||   ||||||||||||||||| |  | |||| |||||||||| |||| ||||    
T  6431424 ttgttgagatgtggctcaaaaatgaaaattgagaaagtgttggaatcgtgacacgattttgggatcgtgacacgattttcaaggccgtga 6431513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 6570170 - 6570247
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttt 160  Q
    ||||||| || |||||||||||||| ||| || |||||    |||||||||||||||||   ||||||||||||||||    
T  6570170 ttgttgaaatttgactcaaaaatggttttggaaaaagttccaaatcgtgacacgatttgtggaccgtgtcacgatttt 6570247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 6360621 - 6360577
Alignment:
Q  182 cagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||| ||| |||||||||||||||||| ||| ||||||||||    
T  6360621 cagggtgcccaattgtgacacgattttggggaaacgtgacacgat 6360577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 33331987 - 33332067
Alignment:
Q  147 cgtgtcacgattttctaggcagtgagcat-gactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||| |||||||||||||| |  ||| ||||||  || ||||| |||||||||||  ||| ||||||||||    
T  33331987 cgtgtcacgattttttaggcagtgagcatggttttttagggtgctcaattgtgtcacgattttggaaaaacgtgacacgat 33332067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 83 - 226
Target Start/End: Original strand, 40146627 - 40146770
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttc 182  Q
    ||||||||||||||||||||||||| ||| |  |||||  |||||||||||||||| |   ||||||| |||||||||||||||||||| ||||  ||||    
T  40146627 ttgttgagatgtgactcaaaaatggttttgggaaaagttcagaatcgtgacacgatctatgaaccgtggcacgattttctaggcagtgaacatggttttc 40146726  T
Q  183 agggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||| | |||||||||||||||| ||||||||| ||||    
T  40146727 agggtgtccaatcgtgacacgattttgggaaaatgtgactcgat 40146770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 42428966 - 42428865
Alignment:
Q  126 atcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgacacg 224  Q
    ||||||||||||||| | || ||||||||||||||||||| ||||||||||  ||| ||||||||||| | |||||||||||||||| ||| ||||||||    
T  42428966 atcgtgacacgatttagtaagcgtgtcacgattttctaggaagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacg 42428867  T
Q  225 at 226  Q
    ||    
T  42428866 at 42428865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 32636441 - 32636544
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||||| ||||  || || |||||||| | |||||||||||||||| ||| ||| |    
T  32636441 aagaatcgtgacacgatttggcaagcgtgtcacca-tttctaggcagtgaacatgttttgcaaggtgtccaatcgtgacacgattttgggaaaacgtggc 32636539  T
Q  222 acgat 226  Q
    |||||    
T  32636540 acgat 32636544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 223
Target Start/End: Complemental strand, 42426783 - 42426685
Alignment:
Q  126 atcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||| ||||||||| |||| ||||||| |||||||| |||||||||||||  ||| ||||||||||| | |||||||||||||||| ||| |||||||    
T  42426783 atcgtcacacgatttagcaagcgtgtcatgattttctgggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacac 42426685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 212986 - 213065
Alignment:
Q  147 cgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||| |||||||||||||| ||||||||||  || ||||| ||||| | |||||||||||||||| ||| ||||||||||    
T  212986 cgtgacacgattttctaggtagtgagcatggtttgcagggcgtccaatcgtgacacgattttgggaaaacgtgacacgat 213065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 5057450 - 5057549
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||| |  | |||  |||||||||||||||| |||||||   |||||||||||||| | |||||||||||||||  ||| |||||||    
T  5057450 gaatcgtgacacgattttggcatcgtagcacgattttctaggcaatgagcatagttttcagggtgtccaatcgtgacacgattttggtaaaacgtgacac 5057549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 37438764 - 37438866
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||| ||||| |  | ||||  ||||||||| ||||||||||||||  |||||| ||||||| | |||||| ||||||||| ||| |||||||    
T  37438764 gaatcgtgacatgattttggcatcgtggtacgattttcaaggcagtgagcatggttttcagagtgtccaatcgtgacatgattttgggaaaacgtgacac 37438863  T
Q  224 gat 226  Q
    |||    
T  37438864 gat 37438866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 42310512 - 42310463
Alignment:
Q  91 atgtgactcaaaaatggattttg-agaaagtgaagaatcgtgacacgatt 139  Q
    ||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  42310512 atgtgactcaaaaattgagtttggagaaagtgaagaatcgtgacacgatt 42310463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 42926502 - 42926548
Alignment:
Q  94 tgactcaaaaatg-gattttgagaaagtgaagaatcgtgacacgatt 139  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||    
T  42926502 tgactcaaaaatttgaatttgagaaagtgaagaatcgtgacacgatt 42926548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 140
Target Start/End: Original strand, 212969 - 212998
Alignment:
Q  111 ttgagaaagtgaagaatcgtgacacgattt 140  Q
    ||||||||||||||||||||||||||||||    
T  212969 ttgagaaagtgaagaatcgtgacacgattt 212998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 12083693 - 12083794
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacg 224  Q
    ||||||||||||||||    | ||||||||||||| | ||||||||||||||  || |||||||  || ||||| |||  ||||||| ||| ||||||||    
T  12083693 aatcgtgacacgatttcatcaacgtgtcacgatttcccaggcagtgagcatggtttacagggtgctcaattgtgtcacagttttgggaaaacgtgacacg 12083792  T
Q  225 at 226  Q
    ||    
T  12083793 at 12083794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 15212405 - 15212507
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    |||| ||||||||  |||||| ||||||||||||||||||||||||||||||  ||| ||||||||||| | |||||||||||||||| ||| |||||||    
T  15212405 aatcatgacacgaagtggcaaacgtgtcacgattttctaggcagtgagcatggttttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacac 15212504  T
Q  224 gat 226  Q
    |||    
T  15212505 gat 15212507  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 33351788 - 33351877
Alignment:
Q  123 agaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgacttt-cagggtgtccatttgtgacacgattttggg 211  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||| ||||  ||| ||||||||||| | ||||||||||||||||    
T  33351788 agaatcgtgacacgatttagcaagcgtgtcacgattttttaggcagtgaacatggttttgcagggtgtccaatcgtgacacgattttggg 33351877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 11383405 - 11383509
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgatttt--ctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgac 221  Q
    ||||||||||||||||| |  | |||| |||||||||  |||| |||||||||||  ||| |||||||||| |||||||||||||||||| ||| |||||    
T  11383405 gaatcgtgacacgattttggcatcgtggcacgattttttctagacagtgagcatggtttttagggtgtccaattgtgacacgattttgggaaaacgtgac 11383504  T
Q  222 acgat 226  Q
    |||||    
T  11383505 acgat 11383509  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 22975958 - 22976037
Alignment:
Q  147 cgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||| ||||||||| ||||||||| |||||  |||||||||||||| | |||||||||||||||| ||| ||||||||||    
T  22975958 cgtgacacgattttttaggcagtgggcatggttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgat 22976037  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 4731266 - 4731312
Alignment:
Q  113 gagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  4731266 gagaaagtgaagaatcgtgacacgatttgacaaccgtgtcacgattt 4731312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 4733434 - 4733479
Alignment:
Q  114 agaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||    
T  4733434 agaaagtgaagaatcatgacacgatttggcaactgtgtcacgattt 4733479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 40220209 - 40220132
Alignment:
Q  83 ttgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgatttt 160  Q
    |||||||||| ||||||||||||||||| || |||||||   || |||||||||||||||  | ||||||||||||||    
T  40220209 ttgttgagatatgactcaaaaatggattgtgcgaaagtgccaaaacgtgacacgatttgggtaacgtgtcacgatttt 40220132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 30143005 - 30143063
Alignment:
Q  168 gtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||  || ||||||||||| | |||||||||||||||| ||||||||||||||    
T  30143005 gtgagcatgttttgcagggtgtccaatcgtgacacgattttgggaaaatgtgacacgat 30143063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 3051700 - 3051631
Alignment:
Q  107 gattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatg 176  Q
    |||| |||||||||  |||||||||||| ||||||| |  |||||||||||||||||| | |||||||||    
T  3051700 gattctgagaaagttcagaatcgtgacatgatttggtaggcgtgtcacgattttctagaccgtgagcatg 3051631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 42435736 - 42435656
Alignment:
Q  147 cgtgtcacgatttt-ctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    |||||||||||||| | | || |||||||||  || ||||||||||| | |||||||||||||||| ||| ||||||||||    
T  42435736 cgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaacgtgacacgat 42435656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 27810975 - 27811019
Alignment:
Q  182 cagggtgtccatttgtgacacgattttgggtaaatgtgacacgat 226  Q
    ||||||||||| | |||||||||||||| | ||||||||||||||    
T  27810975 cagggtgtccaatcgtgacacgattttgagaaaatgtgacacgat 27811019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 192985 - 193099
Alignment:
Q  97 ctcaaaaatggattttgagaaagtgaagaatcgtgacacgatttggcaaccgtgtcacga-ttttctaggcagtgagcatgactttcagggtgtccattt 195  Q
    ||||||||||  ||| |||||||||||||| ||||||| |||||||||| |||||||||| ||||  ||||||||||||||  || ||||||||||| |     
T  192985 ctcaaaaatgattttggagaaagtgaagaaacgtgacatgatttggcaatcgtgtcacgatttttgaaggcagtgagcatggtttgcagggtgtccaatc 193084  T
Q  196 gtgacacgattttgg 210  Q
     |||||| |||||||    
T  193085 atgacacaattttgg 193099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 28220776 - 28220674
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagca-tgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||||| ||  || ||||||| ||| | |||||||||||||||| ||| |||||||    
T  28220776 aatcgtgacacgaattggcaaacgtgtcatgattttcttggcagtgagcactgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacac 28220677  T
Q  224 gat 226  Q
    |||    
T  28220676 gat 28220674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 30476978 - 30476892
Alignment:
Q  122 aagaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgatttt 208  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||| |||||  || ||||||||| | | |||||||||||||    
T  30476978 aagaatcgtgacacgatttagtaagcgtgtcacgattttctaggcagtgggcatgttttgcagggtgtctaatcgtgacacgatttt 30476892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 28223971 - 28223869
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagca-tgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||| | ||  || ||||||| ||| | |||||||||||||||| ||| |||||||    
T  28223971 aatcgtgacacgaattggcaaacgtgtcatgattttcttggcagtgagaactgttttgcagggtgcccaatcgtgacacgattttgggaaaacgtgacac 28223872  T
Q  224 gat 226  Q
    |||    
T  28223871 gat 28223869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 42298637 - 42298593
Alignment:
Q  115 gaaagtgaagaatcgtgacacgatttggcaaccgtgtcacgattt 159  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  42298637 gaaagtgaagaatcatgacacgatttggcaaccgtgtcacgattt 42298593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 29135698 - 29135753
Alignment:
Q  84 tgttgagatgtgactcaaaaatggattttgagaaagtgaagaatcgtgacacgatt 139  Q
    |||||||||||||||||||||||| ||| |  |||||  |||||||||||||||||    
T  29135698 tgttgagatgtgactcaaaaatggttttgggaaaagttcagaatcgtgacacgatt 29135753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 6749 - 6833
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgatttt 208  Q
    ||||||||||||||||| |  | |||| |||||||||||||||||||||||||  || ||||||||||| | |||||||||||||    
T  6749 gaatcgtgacacgattttggcatcgtggcacgattttctaggcagtgagcatggtttgcagggtgtccaatcgtgacacgatttt 6833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 226
Target Start/End: Complemental strand, 81050 - 80948
Alignment:
Q  124 gaatcgtgacacgatttggcaaccgtgtcacgattttctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||| |  | ||||  |||||||||||||||||||||||   ||||||||| |||| | |||||||||||||||| ||| ||| |||    
T  81050 gaatcgtgacacgattttggcatcgtggtacgattttctaggcagtgagcattgttttcagggtatccaatcgtgacacgattttgggaaaacgtggcac 80951  T
Q  224 gat 226  Q
    |||    
T  80950 gat 80948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 10959 - 11061
Alignment:
Q  125 aatcgtgacacgatttggcaaccgtgtcacgatttt-ctaggcagtgagcatgactttcagggtgtccatttgtgacacgattttgggtaaatgtgacac 223  Q
    ||||||||||||||||   |  |||||||||||||| | | || |||||||||  || ||||||||||| | |||||||||||||||| |||||||||||    
T  10959 aatcgtgacacgatttcataggcgtgtcacgattttgcaatgccgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaatgtgacac 11058  T
Q  224 gat 226  Q
    |||    
T  11059 gat 11061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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