View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_473 (Length: 240)
Name: NF10954A_low_473
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_473 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 22768445 - 22768209
Alignment:
| Q |
4 |
tgtcgaagaatataggaaccagcagcggtactttggttaatttattcaagaggcctgatttggaatctgggaatttcgctttcatatatgatcctttctc |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22768445 |
tgtccaagaatataggaaccagcagcggtactttggttaatttattcaagaggcctgatttggaatctgggaatttcgctttcatatatgatcctttctc |
22768346 |
T |
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| Q |
104 |
agaagatccgcagtcgaaagcgattctgcaaatgacatttggtggtaccgaagaaagttacaaggaggagatattaaactgctatcccaataccacaaag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22768345 |
agaagatccgcagtcgaaagcgattctgcaaatgacatttggtggtaccgaagaaagttacaaggaggagatattaaactgctatcccaataccacaaag |
22768246 |
T |
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| Q |
204 |
ttgccgttgcagctttacactattttatcccgtgaac |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22768245 |
ttgccgttgcagctttacactattttatcccgtgaac |
22768209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 21646055 - 21645829
Alignment:
| Q |
4 |
tgtcgaagaatataggaaccagcagcggtactttggttaatttattcaagaggcctgatttggaatctgggaatttcgctttcatatatgatcctttctc |
103 |
Q |
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|||| |||||||||||| ||| |||||||| ||||||||||||||||||| ||| ||||||||| || ||||| ||||||||| ||||||||| || |
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| T |
21646055 |
tgtctaagaatataggacccaacagcggtatcctggttaatttattcaagagacctaatttggaattcggaaatttttctttcatatctgatcctttatc |
21645956 |
T |
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| Q |
104 |
agaagatccgcagtcgaaagcgattctgcaaatgacatttggtggtaccgaagaaagttacaaggaggagatattaaactgctatcccaataccacaaag |
203 |
Q |
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| T |
21645955 |
agatgatccacagtcgaaggcgattatgcaattcacttttggtggtaatgaagaaagttacaa---ggagatagtacgctgctatccagataccaaagcg |
21645859 |
T |
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| Q |
204 |
ttgccgttgcagctttacactattttatcc |
233 |
Q |
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| T |
21645858 |
ttgccattgaaggtttacactattttatcc |
21645829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 21598109 - 21597976
Alignment:
| Q |
37 |
tggttaatttattcaagaggcctgatttggaatctgggaatttcgctttcatatatgatcctttctcagaagatccgcagtcgaaagcgattctgcaaat |
136 |
Q |
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||||||||||||||||| ||||| |||||||| ||| ||||| |||||||||| ||||||||| ||| ||| | || ||||| |||||| || || | |
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| T |
21598109 |
tggttaatttattcaagcggcctaatttggaaattggaaattttgctttcatatgtgatcctttacaagatgattcacaatcgaaggcgattatgaaatt |
21598010 |
T |
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| Q |
137 |
gacatttggtggtaccgaagaaagttacaaggag |
170 |
Q |
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| T |
21598009 |
cacttttggtggtattgacgaaagttacaaggag |
21597976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 21624265 - 21624132
Alignment:
| Q |
37 |
tggttaatttattcaagaggcctgatttggaatctgggaatttcgctttcatatatgatcctttctcagaagatccgcagtcgaaagcgattctgcaaat |
136 |
Q |
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||||||||||||||||||||||| |||||||| || ||||| |||||||||| ||||||||| || ||| | |||||||| |||||| || || | |
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| T |
21624265 |
tggttaatttattcaagaggccttatttggaaatcggaaattttgctttcatatgtgatcctttacacgatgatacacagtcgaaggcgattatgaaatt |
21624166 |
T |
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| Q |
137 |
gacatttggtggtaccgaagaaagttacaaggag |
170 |
Q |
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| T |
21624165 |
cacttttggtggtattgacgaaagttacaaggag |
21624132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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