View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_475 (Length: 240)
Name: NF10954A_low_475
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_475 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 33384636 - 33384430
Alignment:
| Q |
15 |
gacatcatgaaaattgagatgaagggaagcacattagtgtgtttcttgacatggtatagttgcaatccgacgaaaacacatgctagagttgtagatatca |
114 |
Q |
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| T |
33384636 |
gacatcatgaaaactgagatgaagggaagcacattagtgtgtttcttgacatggtatagttgcaatccgacgaaaacacatgctagagttgtagatatca |
33384537 |
T |
|
| Q |
115 |
gaaccatgataatctccatatccattctccaaacagctgttatcgctgtttccgagtaaattgcatatgaagaaagctctaaacttttgaagtaaagagg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33384536 |
gaaccatgataatctccatatccattctccaaacagctgttatcgctgtttccgagtaaattgcatatgaagaaagctctaaacttttgaagtaaagaag |
33384437 |
T |
|
| Q |
215 |
atctgat |
221 |
Q |
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||||||| |
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| T |
33384436 |
atctgat |
33384430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 33378495 - 33378361
Alignment:
| Q |
15 |
gacatcatgaaaattgagatgaagggaagcacattagtgtgtttcttgacatggtatagttgcaatccgacgaaaacacatgctagagttgtagatatca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| || | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33378495 |
gacatcatgaaaattgagatgaagggaagcacattagggtttctcttcacatggttgagttgcaatccgacgaaaacacatgctagagttgtagatatca |
33378396 |
T |
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| Q |
115 |
gaaccatgataatctccatatccattctccaaaca |
149 |
Q |
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| T |
33378395 |
gagccatgataacttccatatccgttctccaaaca |
33378361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 26790677 - 26790814
Alignment:
| Q |
15 |
gacatcatgaaaattgagatgaagggaagcacattagtgtgtttcttgacatggtatagttgcaatccgacgaaaacacatgctagagttgtagatatca |
114 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26790677 |
gacatcatgaaaactgagatgaagggaagcacattagggtgtttcttgacatggtatagttgcaggccgacgaaaacacatgctagagttgtagatatca |
26790776 |
T |
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| Q |
115 |
gaaccatgataatctccatatccattctccaaacagct |
152 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
26790777 |
gaaccatgataatctccatatccgttctccaaacagct |
26790814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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