View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_476 (Length: 240)
Name: NF10954A_low_476
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_476 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 38 - 240
Target Start/End: Original strand, 9804675 - 9804877
Alignment:
| Q |
38 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
137 |
Q |
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| T |
9804675 |
tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga |
9804774 |
T |
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| Q |
138 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcgtgaatggttatctcttttgatgcagttt |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
9804775 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
9804874 |
T |
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| Q |
238 |
tca |
240 |
Q |
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||| |
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| T |
9804875 |
tca |
9804877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
| Q |
10 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
109 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||| |
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| T |
9817550 |
tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc |
9817649 |
T |
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| Q |
110 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa |
153 |
Q |
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| T |
9817650 |
tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa |
9817693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
| Q |
17 |
gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc |
116 |
Q |
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|||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
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| T |
9817438 |
gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc |
9817537 |
T |
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| Q |
117 |
tagcaccatcactgagatcgacatcgatcagaaaaaagaa |
156 |
Q |
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| T |
9817538 |
taccaccataggtgagatcgacatcaatcaaacaaaagaa |
9817577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
| Q |
38 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
137 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||| |
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| T |
9817341 |
tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga |
9817439 |
T |
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| Q |
138 |
catcgatca |
146 |
Q |
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| T |
9817440 |
catcgatca |
9817448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 11558 - 11708
Alignment:
| Q |
10 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
109 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || ||||| ||| | |||||| |
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| T |
11558 |
tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc |
11657 |
T |
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| Q |
110 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat |
160 |
Q |
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| T |
11658 |
tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat |
11708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 11467 - 11585
Alignment:
| Q |
38 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
137 |
Q |
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||||||||||||||||||| |||||| ||||| || | ||| | ||||||||||| || || ||||||||||||| ||| ||| | | |||||||||| |
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| T |
11467 |
tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga |
11566 |
T |
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| Q |
138 |
catcgatcagaaaaaagaa |
156 |
Q |
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| T |
11567 |
cattgatcaaacaaaagaa |
11585 |
T |
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