View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10954A_low_478 (Length: 240)
Name: NF10954A_low_478
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_478 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 1426071 - 1425843
Alignment:
| Q |
6 |
gagatggacatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcatgtcgaaagaannnn |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
1426071 |
gagatgtaaatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcacgttgaaagaatttt |
1425972 |
T |
|
| Q |
106 |
nnnatcgaacatcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttata |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||| |
|
|
| T |
1425971 |
tttatcgaacatcaataaagctgatgatgtttggtggtaaacaaccagcaaaaacataaattaagcatagtagatatgaggacgttgtgttggatgtata |
1425872 |
T |
|
| Q |
206 |
gtaagattagacgggatagaattagagct |
234 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
1425871 |
gtaagattagacggaatagaattagagct |
1425843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 1448161 - 1447933
Alignment:
| Q |
6 |
gagatggacatcatcaaacccatggatgggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttca--tgtcgaaagaann |
103 |
Q |
| |
|
|||||| | ||||||||||| || ||||||||||||| | || |||||||||||||||||| |||||| ||||||||| ||| ||| |||| || |
|
|
| T |
1448161 |
gagatgtaaatcatcaaacct-tgcatgggtggttgaaatggaggaatgcctcgtgtgttttatgtgatgcgaaagtactactcacgtgttgaaataaat |
1448063 |
T |
|
| Q |
104 |
nnnnnatcgaacatcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgattta |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||| ||| | |
|
|
| T |
1448062 |
tttt-atcgaacatcaataaaactgatgatgtttggtggtaaacaaccaacacaaacataaattaagcataatagatatgaagaagttgtgttggatgtg |
1447964 |
T |
|
| Q |
204 |
tagtaagattagacgggatagaattagagct |
234 |
Q |
| |
|
|||||||| |||| |||||| |||||||||| |
|
|
| T |
1447963 |
tagtaagactagaggggataaaattagagct |
1447933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 1470512 - 1470464
Alignment:
| Q |
131 |
gatgtttggtggtaaacaatcagcacaaacataaattaagcatagtaga |
179 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
1470512 |
gatgtttggtggtaagcaaccaacacaaacataaattaagcatagtaga |
1470464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 52442909 - 52442825
Alignment:
| Q |
133 |
tgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagac |
217 |
Q |
| |
|
||||||||||||| || || |||||| ||||||||||| ||| ||| ||||||| |||||||| ||| | | |||||| ||||| |
|
|
| T |
52442909 |
tgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagac |
52442825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University