View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_481 (Length: 239)

Name: NF10954A_low_481
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_481
NF10954A_low_481
[»] chr2 (8 HSPs)
chr2 (2-168)||(10524200-10524366)
chr2 (9-168)||(17116694-17116854)
chr2 (7-153)||(39338695-39338841)
chr2 (7-148)||(387280-387420)
chr2 (66-162)||(7874454-7874550)
chr2 (66-162)||(14106343-14106440)
chr2 (66-138)||(7460839-7460912)
chr2 (66-162)||(5254419-5254511)
[»] chr3 (16 HSPs)
chr3 (10-168)||(47235806-47235964)
chr3 (9-162)||(31482991-31483143)
chr3 (7-168)||(2392321-2392482)
chr3 (7-168)||(2394085-2394246)
chr3 (9-162)||(34475577-34475728)
chr3 (7-168)||(20611888-20612048)
chr3 (9-168)||(53248007-53248167)
chr3 (7-162)||(45163960-45164115)
chr3 (7-160)||(17551062-17551210)
chr3 (10-162)||(43012484-43012635)
chr3 (7-168)||(19176608-19176770)
chr3 (66-162)||(30352262-30352356)
chr3 (38-168)||(9583870-9583999)
chr3 (66-152)||(23328181-23328268)
chr3 (66-162)||(40023393-40023490)
chr3 (66-162)||(45398959-45399056)
[»] chr1 (15 HSPs)
chr1 (5-162)||(5459264-5459421)
chr1 (5-168)||(5389237-5389399)
chr1 (7-168)||(24449745-24449906)
chr1 (5-168)||(46692634-46692797)
chr1 (7-162)||(41920557-41920717)
chr1 (7-134)||(31585608-31585736)
chr1 (5-140)||(6764224-6764359)
chr1 (5-87)||(30685800-30685882)
chr1 (107-168)||(6804745-6804806)
chr1 (66-162)||(46814288-46814385)
chr1 (110-162)||(30685745-30685797)
chr1 (66-139)||(7857816-7857890)
chr1 (124-162)||(24684312-24684350)
chr1 (7-89)||(24684372-24684453)
chr1 (126-162)||(31584858-31584894)
[»] chr5 (6 HSPs)
chr5 (5-168)||(18593346-18593509)
chr5 (8-162)||(34378204-34378358)
chr5 (5-155)||(698464-698614)
chr5 (30-168)||(7161831-7161969)
chr5 (11-166)||(18313460-18313614)
chr5 (7-168)||(29087587-29087745)
[»] chr8 (17 HSPs)
chr8 (7-168)||(20138531-20138693)
chr8 (7-168)||(31207177-31207338)
chr8 (5-162)||(37986679-37986836)
chr8 (10-162)||(24995215-24995368)
chr8 (7-162)||(9519604-9519760)
chr8 (5-160)||(12898098-12898252)
chr8 (10-162)||(41893223-41893374)
chr8 (5-159)||(32066119-32066273)
chr8 (11-162)||(34388828-34388977)
chr8 (9-102)||(22773606-22773699)
chr8 (90-168)||(16457290-16457368)
chr8 (107-162)||(22773820-22773875)
chr8 (5-80)||(16457364-16457439)
chr8 (7-162)||(36630943-36631084)
chr8 (94-168)||(35821432-35821506)
chr8 (92-162)||(38577610-38577681)
chr8 (108-162)||(35816067-35816121)
[»] chr7 (16 HSPs)
chr7 (5-159)||(5860112-5860266)
chr7 (7-168)||(44353378-44353540)
chr7 (7-168)||(47325700-47325861)
chr7 (5-168)||(37795092-37795255)
chr7 (5-158)||(38306364-38306517)
chr7 (35-168)||(31971949-31972082)
chr7 (5-168)||(10244285-10244448)
chr7 (10-162)||(3419476-3419628)
chr7 (35-162)||(3867249-3867376)
chr7 (9-162)||(25160920-25161071)
chr7 (7-130)||(33435215-33435337)
chr7 (66-162)||(3419217-3419313)
chr7 (7-162)||(41089570-41089723)
chr7 (95-168)||(40726320-40726392)
chr7 (66-139)||(34390125-34390199)
chr7 (66-160)||(6585045-6585140)
[»] scaffold0343 (1 HSPs)
scaffold0343 (7-168)||(5811-5972)
[»] chr6 (3 HSPs)
chr6 (5-168)||(3117596-3117759)
chr6 (37-161)||(10541967-10542091)
chr6 (47-168)||(14663222-14663343)
[»] chr4 (10 HSPs)
chr4 (7-168)||(8255132-8255293)
chr4 (7-168)||(8268550-8268711)
chr4 (8-168)||(30167380-30167539)
chr4 (5-167)||(30964544-30964702)
chr4 (10-129)||(4305833-4305951)
chr4 (66-168)||(8705959-8706061)
chr4 (98-162)||(20464786-20464850)
chr4 (7-151)||(31050493-31050636)
chr4 (66-139)||(2825946-2826019)
chr4 (66-162)||(35341161-35341256)
[»] scaffold0068 (1 HSPs)
scaffold0068 (7-168)||(35590-35748)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 10524200 - 10524366
Alignment:
Q  2 ggtgttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagtttta 101  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10524200 ggtgttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagtttta 10524299  T
Q  102 tttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10524300 tttggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacggtgct 10524366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 17116854 - 17116694
Alignment:
Q  9 ggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggag-ttttatttgta 107  Q
    |||||||||||||||||||||| |||| |||||| || |||||||||||||||  | |||||||||||||||||||||||| || ||| ||||||||  |    
T  17116854 ggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgctcttcgtaatgtggctcagcttgggtgttggggtctgagagtttttattttga 17116755  T
Q  108 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  17116754 gggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgtttacagtgct 17116694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 39338841 - 39338695
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||   ||| |||||||||||||||| ||| ||||||||||||||      
T  39338841 tcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctgggagttttattttg 39338742  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggatac 153  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||    
T  39338741 agggtgttctttgtgggtgagtagtgacgatgggcgatggtggatac 39338695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 387280 - 387420
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||| ||||||||  || |||| |||| || |||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||      
T  387280 tcggaggtcacgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctgggagttttattttg 387378  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtg 148  Q
    ||||||||||||| |||||| |||||||||||| ||||||||    
T  387379 agggtgttctttgggggtgaatagtgacgatgggcggtggtg 387420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 7874454 - 7874550
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||||||||||  || | ||||||||||||  |||| ||||||||| |||||||||||||||||||  ||| |||||||| ||||||||    
T  7874454 gtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttctttg-gggtgagtagtgacgatgggtggttgtggatactgtgtttac 7874550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 14106440 - 14106343
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||||||||||  || || |||||||||||  |||| ||||||||| ||||||||||||||||||   ||| |||||||| ||||||||    
T  14106440 gtggctcagcttgggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttac 14106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 7460839 - 7460912
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagtttta-tttgtagggtgttctttgtgggtgagtagtgacgatg 138  Q
    ||||||||||||||||||||  || ||||||||||| ||||  |||||||||||| || |||||||||||||||    
T  7460839 gtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatg 7460912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 5254419 - 5254511
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||| ||||||||||  || || |||||||  |||  ||||||||||||  ||||||||||||||||||  ||| |||||||| ||||||||    
T  5254419 gtggctcagtttgggtgttgaagtctgagagtttt--ttgaggggtgttctttg--ggtgagtagtgacgatgggtggttgtggatactgtgtttac 5254511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 47235806 - 47235964
Alignment:
Q  10 gaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagg 109  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||| ||||||||||||||||||| || |||||||||||  |||    
T  47235806 gaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttgagg 47235905  T
Q  110 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47235906 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgct 47235964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 31482991 - 31483143
Alignment:
Q  9 ggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtag 108  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |||||||||||| |||||||||||||| ||||||| |||  ||    
T  31482991 ggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttaggtgttggggtttgagagtttt-ttttaag 31483089  T
Q  109 ggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||||| ||||||||||||| || |||||||||||| |||||||    
T  31483090 ggtgttctttgtgggttagtagtgacgatgaacagtggtggataccatgtttac 31483143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 2392482 - 2392321
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagtttta-tttg 105  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||| | | |||||||||||||||||||||||| | ||||||||| ||||    
T  2392482 tcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttg 2392383  T
Q  106 tagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    || |||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  2392382 ta-ggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgct 2392321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 2394246 - 2394085
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagtttta-tttg 105  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||| | | |||||||||||||||||||||||| | ||||||||| ||||    
T  2394246 tcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttg 2394147  T
Q  106 tagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    || |||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  2394146 ta-ggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgct 2394085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 34475728 - 34475577
Alignment:
Q  9 ggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtag 108  Q
    |||||||||||||||||||||||||  |||||||||| |||||||||||||||| | ||| |||||||| ||||||||||| || ||||||  |||  ||    
T  34475728 ggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactcagcttaggtgttggggtatgagagttt--ttttaag 34475631  T
Q  109 ggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34475630 ggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 34475577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 20611888 - 20612048
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||||||||||| | ||| ||||||||||||||| |||| | |||||||||||       
T  20611888 tcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgtt-gggtctaggagttttattctg 20611986  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||    
T  20611987 agggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgct 20612048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 53248007 - 53248167
Alignment:
Q  9 ggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggag-ttttatttgta 107  Q
    ||||||||||||||||||||||| |  |||||||||| |||| ||||||||||| | ||||||||| |||||||||||||| || ||| ||||||||  |    
T  53248007 ggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagtttttattttga 53248106  T
Q  108 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    | |||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||    
T  53248107 gagtgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgtttacagtgct 53248167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 45163960 - 45164115
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||| | |||||| ||||||||||||||||| | ||||||||||||      
T  45163960 tcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagttttattttg 45164059  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||| ||||| ||||| |||||||||||| ||||| || |||||||||||||    
T  45164060 agggtgttatttgtaggtgattagtgacgatgggcggtgatgaataccgtgtttac 45164115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 17551062 - 17551210
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||||||||||||| ||||||      |||||||||||||||| | ||||||||| |||||||||||||| || |||||||||||      
T  17551062 tcggaggtcgcgaggtttgtgatagctgcatgatg-----gttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttg 17551156  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttt 160  Q
    |||||||||||||| |||||||||||||||||| ||||||||| |||| |||||    
T  17551157 agggtgttctttgtcggtgagtagtgacgatgggcggtggtggttaccttgttt 17551210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 43012484 - 43012635
Alignment:
Q  10 gaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagg 109  Q
    |||||||||||||| |||  || | ||||||| ||| || ||||||||||||| | |||||||||||||||||||||||| | ||||||||| ||  |||    
T  43012484 gaggtcgcgaggtt-gtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttaatttgagg 43012582  T
Q  110 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||  ||||||||||| |||||||||| ||||||||||||||||||    
T  43012583 gtgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttac 43012635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 19176608 - 19176770
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatcctt--cagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||| ||||| |||  |||| ||||||||||  | || ||||||||||||  | |||||||||||||||||| ||||| |||| |||||||||    
T  19176608 tcggaggtcgcaaggtt-gtggaagctgcatgatccttttcggtcaggtgctcttcgtaatgtggctcagcttgggtgtcggggtctgggtgttttattt 19176706  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
      ||||||||||||  |||||||||||||||||||| |||||||||||| |||||||| |||||    
T  19176707 tgagggtgttctttaggggtgagtagtgacgatggatggtggtggatactgtgtttactgtgct 19176770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 30352356 - 30352262
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||||||||||||| | |||||||| |||  |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||    
T  30352356 gtggctcagcttgggtgttggggtctcggagtttttttt--agggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttac 30352262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 168
Target Start/End: Complemental strand, 9583999 - 9583870
Alignment:
Q  38 gatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgacgat 137  Q
    |||||||| || ||| |||||||||   ||||||| |||||||| ||||||| ||||||||||||||  ||| ||||||||| || ||||||||||||||    
T  9583999 gatccttcggtcaggcgctcttcgaattgtggctctgcttgggttttggggtctgggagttttattttgaggatgttctttgcgg-tgagtagtgacgat 9583901  T
Q  138 ggacggtggtggataccgtgtttacggtgct 168  Q
     | |||||||||||| |||||||||||||||    
T  9583900 aggcggtggtggatatcgtgtttacggtgct 9583870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 23328268 - 23328181
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtag-ggtgttctttgtgggtgagtagtgacgatggacggtggtggata 152  Q
    ||||||||||||||||||||  || ||||||||||||||  || ||||||||||| |||||||||||||||||||  ||| |||||||    
T  23328268 gtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggata 23328181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 40023490 - 40023393
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtagggt-gttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||| ||||||||  || ||||||||||||||  ||||  |||||||  || ||||||||||||||||| ||| |||||||||||||||||    
T  40023490 gtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggataccgtgtttac 40023393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 45398959 - 45399056
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttattt-gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||| || ||| |||||||  ||||||||||| ||||| || |||||||| ||| |||||||||||||||||||| | | |||||||  ||||||||    
T  45398959 gtggcgcaacttaggtgttgaagtttgggagttctattttgtggggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttac 45399056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 5459264 - 5459421
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||||||||||||| ||| ||||||||||    
T  5459264 gttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagttttattt 5459363  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
      | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5459364 tgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 5459421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 5389399 - 5389237
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||| |||||||||| |||||| |||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5389399 gttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattt 5389300  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
      ||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||    
T  5389299 tgagggtgttc-ttgtaagtgagtagtgacgatgggcggtggtggataccgtgtttacggtgct 5389237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 24449906 - 24449745
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| | | |||||||||||||||||||||| | ||||||||||||      
T  24449906 tcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctcttcgaaatgcggctcagcttgggtgttggggtctaggagttttattttg 24449807  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  24449806 agggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgct 24449745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 46692797 - 46692634
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||||| ||| ||||| | |||| ||||||||||| | |||||||||||||||||||||||| ||| ||||||||||    
T  46692797 gttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttattt 46692698  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    | ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||    
T  46692697 ggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgtttacagtgct 46692634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 41920557 - 41920717
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatcct-----tcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagtttta 101  Q
    ||||||||||||||||||||||||||| |||||||||     |||||||||||||||||   | |||||||||||||||||||||||| | |||||||||    
T  41920557 tcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagttaggtgctcttcatcatgtggctcagcttgggtgttggggtcttggagtttta 41920656  T
Q  102 tttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||  |||||||| |||||||||||||||||||||| | |||||||| |||||||||||||    
T  41920657 ttttgagggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgtttac 41920717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 31585736 - 31585608
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgtt-ggggtttgggagttttatttg 105  Q
    |||||||||||||||||||||||||||  |||||||||  |||||||||||||||| | |||||| |||||||||||| ||||| || |||||||||||     
T  31585736 tcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggtgctcttcgaaatgtggctaagcttgggtgttgggggtctgagagttttatttt 31585637  T
Q  106 tagggtgttctttgtgggtgagtagtgac 134  Q
     ||||||||||||||||||||||||||||    
T  31585636 gagggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 6764359 - 6764224
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||| ||| || |||||||||||||||| |||| |||||| |||||||||||||||| | |||||||| ||||| |  |||||| ||||||||||||||    
T  6764359 gttcgaagggcgtgaggtttgtgatagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattt 6764260  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatgga 140  Q
      ||| ||||||||||||||||||||||||||||||    
T  6764259 tcaggatgttctttgtgggtgagtagtgacgatgga 6764224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 30685882 - 30685800
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggg 87  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||| | |||| ||||||||||||||||||||||    
T  30685882 gttcggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggtgctccttgatatgtggctcagcttgggtgttggg 30685800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 6804745 - 6804806
Alignment:
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| || ||||| |||||    
T  6804745 agggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttacagtgct 6804806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 46814385 - 46814288
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||| || |||||||||  || ||||||||||||||  |||| |||| ||||  ||||||||||||||||||||||| |||||||| ||||||||    
T  46814385 gtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttac 46814288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 30685797 - 30685745
Alignment:
Q  110 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||    
T  30685797 gtgttctttgtgggtgtgtagtgaagatgggcggtggtggataccgtgtttac 30685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 7857816 - 7857890
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagtttta-tttgtagggtgttctttgtgggtgagtagtgacgatgg 139  Q
    ||||||||| ||||||||||  || ||||||||||| ||||  ||||||||| || |||||||||||| ||||||    
T  7857816 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgg 7857890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 24684350 - 24684312
Alignment:
Q  124 tgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  24684350 tgagtagtgacgatgggcggtggtggatatcgtgtttac 24684312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 24684453 - 24684372
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggt 89  Q
    ||||||||||||||||| |||  || | ||||||||||| || ||||||||||||| | |||||||| ||||| ||| |||||    
T  24684453 tcggaggtcgcgaggtt-gtggaagatgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtcggggt 24684372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 31584894 - 31584858
Alignment:
Q  126 agtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||  ||||||||||||||||||||||    
T  31584894 agtagtgacgatgagcggtggtggataccgtgtttac 31584858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 18593346 - 18593509
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    |||||||||||||||| |||||||||| | ||||||||||| |||||||| ||||||| | |||||||| ||||||||||||||| ||||||||||||||    
T  18593346 gttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggtgttcttcgaaatgtggctcaacttgggtgttggggtctgggagttttattt 18593445  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  18593446 ggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgct 18593509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 34378204 - 34378358
Alignment:
Q  8 cggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgta 107  Q
    |||||||||||||||||||||||| |   ||||||||| ||||| |||||||||  | ||||||||||||||||||||||||||| |||||||||||  |    
T  34378204 cggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaatgtggctcagcttgggtgttggggtttgagagttttattttga 34378303  T
Q  108 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34378304 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 34378358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 698464 - 698614
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||| || | |||||||||||||||||||||||| || |||||||||||    
T  698464 gttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtgctctttgaaatgtggctcagcttgggtgttggggtctgagagttttattt 698563  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccg 155  Q
    | ||||||||||||||||||||||||||||||| | || ||||||||||||    
T  698564 ggagggtgttctttgtgggtgagtagtgacgatcggcgatggtggataccg 698614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 7161969 - 7161831
Alignment:
Q  30 agctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagta 129  Q
    |||| ||||||||||  || ||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||  | ||||||||||| |||||||||    
T  7161969 agctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 7161870  T
Q  130 gtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||| |||  ||||||||| | ||||||||| |||||    
T  7161869 gtgacgttgggtggtggtggaaatcgtgtttacagtgct 7161831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 18313614 - 18313460
Alignment:
Q  11 aggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtaggg 110  Q
    ||||||||||||||||||||||| ||||||| |||  ||||||||||||||| | |||||| || |||||| || || ||| |||||||| | | |||||    
T  18313614 aggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggttttaggattttggagtttt-tctttaggg 18313516  T
Q  111 tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtg 166  Q
    |||||||  |||||||||||||||||||   |||| |||||| |||||||||||||    
T  18313515 tgttcttcatgggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtg 18313460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 29087587 - 29087745
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    |||||||||||||||||  || ||||| ||||||||||  || |||||||||||| || |||||||| ||| | ||||||||| |||||| |||||||      
T  29087587 tcggaggtcgcgaggtta-tggtagctccatgatcctttggtcaggtgctcttcg-tatgtggctcaacttagatgttggggtctgggagctttattttg 29087684  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||| ||||||  ||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  29087685 agggt-ttctttaggggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgct 29087745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 20138531 - 20138693
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||| | | |||||||||||||||| |||||||||||||| |    
T  20138531 tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttattttt 20138630  T
Q  107 -agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  20138631 gagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgct 20138693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 31207338 - 31207177
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    |||||||||||||||||||||||||||  |||| ||||| |||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||      
T  31207338 tcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggagttttattttg 31207239  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| |||||||| |||||    
T  31207238 agggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgct 31207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 37986836 - 37986679
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| | |||||||||||||||||||  ||| ||||||||||||||    
T  37986836 gttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgtttcggtctgggagttttattt 37986737  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    | ||||||||||||||||||||||| |||||||||  |||||| ||||||||||||||    
T  37986736 ggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgtttac 37986679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 24995368 - 24995215
Alignment:
Q  10 gaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgtt-ggggtttgggagttttatttgtag 108  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||| |  |||||||||||||||||| ||||| | ||||||||||||  ||    
T  24995368 gaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagttttattttgag 24995269  T
Q  109 ggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24995268 ggtgttctttgtgcgtgagtagtgacgatgggcggtggtggataccgtgtttac 24995215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 9519604 - 9519760
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtt-tgggagttttatttg 105  Q
    |||||||| |||| ||||||||||||| ||||||| ||| |||||||||||||||| |  |||||||||||||||||||||| | || |||||||||||     
T  9519604 tcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagttttatttt 9519703  T
Q  106 tagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9519704 gagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttac 9519760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 160
Target Start/End: Complemental strand, 12898252 - 12898098
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| | |||||||||||||||||||||||| |  |||||||||||    
T  12898252 gttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtcttagagttttattt 12898154  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttt 160  Q
      |||||||||||||||||||||||||||||||| ||||| |||||| || |||||    
T  12898153 tgagggtgttctttgtgggtgagtagtgacgatgaacggttgtggattccatgttt 12898098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 41893374 - 41893223
Alignment:
Q  10 gaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagg 109  Q
    |||||||| ||||||||||||||| |||||||||||  | |||| |||||||| | |||||||||||||||||||| ||| |||||||| |||||  |||    
T  41893374 gaggtcgcaaggtttgtgatagctgcatgatccttctat-aggtactcttcgaaatgtggctcagcttgggtgttgaggtctgggagttctattttcagg 41893276  T
Q  110 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41893275 gtgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgtttac 41893223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 32066273 - 32066119
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    |||| ||||| |||||||||||||||||| ||||||| ||| ||||| ||||||| || | |||| ||||||||||||||||||| || |||||||||||    
T  32066273 gttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagatgctctttgaaatgtggttcagcttgggtgttggggtctgagagttttattt 32066174  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtt 159  Q
    | ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  32066173 ggagggtgttctttgtgagtgagtagtgacgatgggcggtggtggatacagtgtt 32066119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 34388977 - 34388828
Alignment:
Q  11 aggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtaggg 110  Q
    |||||| |||||||||||||||||  |||||||||||||||||| |||||   | |||||||||||||||||||||||| || |||||||||||  ||||    
T  34388977 aggtcgtgaggtttgtgatagctag-tgatccttcagttaggtgttcttcatcatgtggctcagcttgggtgttggggtatgagagttttattttgaggg 34388879  T
Q  111 tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  34388878 tgttctttgtgggtgagtagtgacgataggcggtggtggata-cgtgtttac 34388828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 22773606 - 22773699
Alignment:
Q  9 ggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttat 102  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||    
T  22773606 ggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgggagttttat 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 16457368 - 16457290
Alignment:
Q  90 ttgggagttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16457368 ttgggagttttattttcagggtggtctttatgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgct 16457290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 22773820 - 22773875
Alignment:
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||    
T  22773820 agggtgttctttgtgggtgagtagtgacgatgggcagtggtggttaccatgtttac 22773875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 16457439 - 16457364
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttggg 80  Q
    ||||||| |||| |||||||||||||||| ||||||| |   ||||||||||||| || | |||||||||||||||    
T  16457439 gttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggttaggtgctctttgaaatgtggctcagcttggg 16457364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 36630943 - 36631084
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||| |||  |||| ||||||||||| || ||||||||||||| | |||||||| ||||| ||| ||||| || | ||||||         
T  36630943 tcggaggtcgcgaggtt-gtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggctcaacttggatgtgggggtctgcgtgtttta----- 36631036  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
             |||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  36631037 --------gtttgggggtgagtagttacgatgggcggtggtggataccgtgtttac 36631084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 35821432 - 35821506
Alignment:
Q  94 gagttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||||||||  ||||||||||||| || |||||||||| ||||| ||||| | ||||| |||||||| |||||    
T  35821432 gagttttattttaagggtgttctttgaggatgagtagtgatgatgggcggtgctagatactgtgtttacagtgct 35821506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 38577681 - 38577610
Alignment:
Q  92 gggagttttattt-gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||| || | |||||||||| || ||||||||||||||||| | | |||||||| ||||||||    
T  38577681 gggagttttattttgtggagtgttctttggggatgagtagtgacgatggatgattgtggatactgtgtttac 38577610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 162
Target Start/End: Complemental strand, 35816121 - 35816067
Alignment:
Q  108 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||| ||||||||||||| |||||  ||| |||||||| ||||||||    
T  35816121 gggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttac 35816067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 5860266 - 5860112
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  5860266 gttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattt 5860167  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtt 159  Q
      |||||||||||||||| |||||||||||||||| |  ||||| ||||||||||    
T  5860166 tcagggtgttctttgtggatgagtagtgacgatgggcaatggtgaataccgtgtt 5860112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 44353540 - 44353378
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||| | | |||||||||||||||| |||||||||||||| |    
T  44353540 tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttattttt 44353441  T
Q  107 -agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  44353440 gagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgct 44353378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 47325861 - 47325700
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||      
T  47325861 tcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttg 47325762  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||||||||||||||||||||||||||||||| || || ||||||| |||||||| |||||    
T  47325761 agggtgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtgct 47325700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 37795092 - 37795255
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||    
T  37795092 gttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggtgttggggtttgagagttttattt 37795191  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
      |||||||||||||||| | |||||| | ||||| |||||||||||||||||||||| |||||    
T  37795192 tgagggtgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtgct 37795255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 38306364 - 38306517
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  38306364 gttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagtgctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttattt 38306463  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgt 158  Q
      |||||||||||||| ||||||||||||||||||  ||||||||||| |||||    
T  38306464 tgagggtgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgt 38306517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 31972082 - 31971949
Alignment:
Q  35 catgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgac 134  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  31972082 catgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtgac 31971983  T
Q  135 gatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||| ||||||| |||||||||||||| |||||    
T  31971982 gatgggcggtggttgataccgtgtttacagtgct 31971949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 10244285 - 10244448
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||   ||||||||||||||||||| |||| ||||| ||||| ||    
T  10244285 gttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctctttgaattgtggctcagcttgggtgtttgggtctgggatttttagtt 10244384  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    | |||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||    
T  10244385 ggagggtggtctttgtgggtgagtagtgacgatgggcgatggtggataccatgtttacggtgct 10244448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 3419628 - 3419476
Alignment:
Q  10 gaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagg 109  Q
    |||||| | ||||||||||||||| | ||||||||| ||||||||| ||||||   |||||| | ||||||||||||||||||||||||||||||  |||    
T  3419628 gaggtcacaaggtttgtgatagctgcttgatccttcggttaggtgcgcttcgaattgtggcttaacttgggtgttggggtttgggagttttattttaagg 3419529  T
Q  110 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||||||| |||||||||||||||| ||||||||||||| | |||||||    
T  3419528 gtgttctttgtgagtgagtagtgacgatgaacggtggtggatatcatgtttac 3419476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 3867249 - 3867376
Alignment:
Q  35 catgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgac 134  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||||||||| || ||| ||||||||||  ||||||||||||| ||||||||||||||    
T  3867249 catgatcctttggtcaggtgctcttcgatatgtggctcagcttgggtgttggagtatggaagttttattttgagggtgttctttgggggtgagtagtgac 3867348  T
Q  135 gatggacggtggtggataccgtgtttac 162  Q
    |||||||||||||||||| |||||||||    
T  3867349 gatggacggtggtggatatcgtgtttac 3867376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 25160920 - 25161071
Alignment:
Q  9 ggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtag 108  Q
    ||||||| | |||||||||||||||   ||||||||||||||||||||||| || | |||||||| ||| | ||||||||| || ||||||  |||  |     
T  25160920 ggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaaatgtggctcaacttagatgttggggtctgagagttt--ttttaaa 25161017  T
Q  109 ggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||||||||||||||||||||| || ||||||||||  |||||||    
T  25161018 ggtgttctttgtgggtgagtagtgacgatgggcgttggtggatactatgtttac 25161071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 33435215 - 33435337
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||| |||| |||||||||||||||| || |||||||||||||   |||||||||||||| ||||| ||| || ||||||| |||      
T  33435215 tcggaggtcgcgaggtt-gtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttgttgaggtctgagagttttcttttg 33435313  T
Q  107 agggtgttctttgtgggtgagtag 130  Q
    ||||||||||||| ||||||||||    
T  33435314 agggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 3419313 - 3419217
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||| | ||||||||||||||||||||||||||||||  |||||||| |||||| ||||||||||| |||| ||||||||||||| | |||||||    
T  3419313 gtggcttaacttgggtgttggggtttgggagttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatgtttac 3419217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 41089723 - 41089570
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||| |||  |||| |||||| ||||  | |||||||||||||   || |||||   |||||||| |||| ||||||||||||||      
T  41089723 tcggaggtcgcgaggtt-gtggaagctgcatgattcttcgttgaggtgctcttcgaagtgtagctcaagatgggtgttagggtctgggagttttattttg 41089625  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||||||| |||| | ||||||| |||| ||||||| ||||| ||||||||    
T  41089624 agggtgttctttgcgggt-aatagtgacaatgggcggtggtagatactgtgtttac 41089570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 40726392 - 40726320
Alignment:
Q  95 agttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||||||||  |||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| |||||    
T  40726392 agttttattttgagggtgttctttgtgg-tgagtagtgatgataggcggtggtggataccgtgtttaccgtgct 40726320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 34390125 - 34390199
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtaggg-tgttctttgtgggtgagtagtgacgatgg 139  Q
    |||||||| |||||||||||  || ||||||||||||||  |||| ||||||||| || ||||||||||||||||    
T  34390125 gtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgttctttggggatgagtagtgacgatgg 34390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 6585045 - 6585140
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagtttta-tttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttt 160  Q
    ||||||||||||||||||||  || ||||||||||| ||||  ||||| | ||||  |||||||||||||||||   ||| |||||||| ||||||    
T  6585045 gtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggttgtggatactgtgttt 6585140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 5811 - 5972
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||  | |||||||||||||||||||||| | ||||||||||||||      
T  5811 tcggaggtcgcaaggtttgtgatagctacttgatccttcggttaggtgctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttg 5910  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||||| |||||||||||||||||| |||||  ||||||||||||| |||||||||||||    
T  5911 agggtgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgtttacggtgct 5972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 3117596 - 3117759
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||| | |||||||||||  ||| ||||||||||| | |||||||| ||||||||||||||| ||||||||||||||    
T  3117596 gttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgtgctcttcgaaatgtggctcaacttgggtgttggggtctgggagttttattt 3117695  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
     ||||||||||||||||||| ||||| |||||||  ||||||||| |||||||||||| |||||    
T  3117696 atagggtgttctttgtgggtaagtagagacgatgagcggtggtggttaccgtgtttacagtgct 3117759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 10541967 - 10542091
Alignment:
Q  37 tgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgacga 136  Q
    ||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  10541967 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacga 10542066  T
Q  137 tggacggtggtggataccgtgttta 161  Q
    ||| |||||||||||||||| ||||    
T  10542067 tgggcggtggtggataccgtattta 10542091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 14663222 - 14663343
Alignment:
Q  47 gttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtgg 146  Q
    ||||| || ||||||| | ||||||| |||||| ||||||||||||||||||||||||  ||| ||||||||| ||||||||||||||||||| ||||||    
T  14663222 gttagatgttcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtgg 14663321  T
Q  147 tggataccgtgtttacggtgct 168  Q
    ||||||  |||||||| |||||    
T  14663322 tggatattgtgtttacagtgct 14663343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 8255132 - 8255293
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||  | ||||||||||||||||||| |||| || |||||||||||      
T  8255132 tcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttg 8255231  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| |||||||| |||||    
T  8255232 agggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgct 8255293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 8268550 - 8268711
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||||||||||||  | ||||||||||||||||||| |||| || |||||||||||      
T  8268550 tcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttg 8268649  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| |||||||| |||||    
T  8268650 agggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgct 8268711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 30167539 - 30167380
Alignment:
Q  8 cggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgta 107  Q
    ||||||||||||||||| |||||||| ||||| ||||| |||| | ||||||||| | ||||| || ||||||||||||||| ||||||||||||||  |    
T  30167539 cggaggtcgcgaggtttatgatagctgcatgacccttcggttaagcgctcttcgaaatgtggcccaacttgggtgttggggtatgggagttttattttga 30167440  T
Q  108 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |||||    
T  30167439 gggtgttctttgtgggtgagtggtgacgttgg-cggtggtggataccgtgtttacagtgct 30167380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 30964544 - 30964702
Alignment:
Q  5 gttcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttattt 104  Q
    ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| | ||||| | ||||||||    ||   ||||||||||||||    
T  30964544 gttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatgtggccctgcttgggt----ggtactgggagttttattt 30964639  T
Q  105 gtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgc 167  Q
      ||||||||||||||||||||||||||| ||||| |||||||| ||| ||| ||||| ||||    
T  30964640 tgagggtgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtgc 30964702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 4305833 - 4305951
Alignment:
Q  10 gaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgtagg 109  Q
    |||||||| |||||||||||| || ||||||||||| || ||||||||||||| | |||||||| ||||||| || |||||||||||||||||||  |||    
T  4305833 gaggtcgcaaggtttgtgataactgcatgatccttcggtgaggtgctcttcga-atgtggctcaacttgggtatttgggtttgggagttttattttcagg 4305931  T
Q  110 gtgttctttgtgggtgagta 129  Q
    ||| ||||||||||||||||    
T  4305932 gtgatctttgtgggtgagta 4305951  T

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Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 8706061 - 8705959
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggt 165  Q
    |||||||||||||||||||||||| |  |||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||| ||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttacagt 8705962  T
Q  166 gct 168  Q
    |||    
T  8705961 gct 8705959  T

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Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 20464786 - 20464850
Alignment:
Q  98 tttatttgtagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    |||||||  |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttac 20464850  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 31050636 - 31050493
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    |||||||||| |||||| |||  |||| |||| || ||| |||||| ||| ||||||  |||||| |||||||||||||  || |||  |||||||||      
T  31050636 tcggaggtcgagaggtt-gtggaagctgcatgttcattcggttaggagcttttcgatt-gtggctaagcttgggtgttgaagtctggctgttttattttg 31050539  T
Q  107 aggg-tgttctttgtgggtgagtagtgacgatggacggtggtggat 151  Q
    |||| ||||| ||| |||||||||||||||||||| | ||||||||    
T  31050538 aggggtgttccttgggggtgagtagtgacgatggatgatggtggat 31050493  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 2825946 - 2826019
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagtttta-tttgtagggtgttctttgtgggtgagtagtgacgatgg 139  Q
    |||| |||| ||||||||||  |||||||||||||| ||||  ||||||||| || |||||||||||||||||||    
T  2825946 gtggttcagtttgggtgttgaagtttgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgg 2826019  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 35341256 - 35341161
Alignment:
Q  66 gtggctcagcttgggtgttggggtttgggagttttatttgtaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttac 162  Q
    ||||||||| |||| |||||  |||||||||||||||||  |||| |||||| || |||||||||||||||||||  ||| | |||||| ||||||||    
T  35341256 gtggctcagtttgg-tgttgaagtttgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggtggttgcggatactgtgtttac 35341161  T

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Target: scaffold0068 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 35748 - 35590
Alignment:
Q  7 tcggaggtcgcgaggtttgtgatagctacatgatccttcagttaggtgctcttcgatacgtggctcagcttgggtgttggggtttgggagttttatttgt 106  Q
    ||||||||| |||| |||||||||||| |||||||| || |||||||||||||||| | | |||||||||||||||||||||| |||||||||  ||| |    
T  35748 tcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgctcttcgaaatgaggctcagcttgggtgttggggtgtgggagttt--ttttt 35651  T
Q  107 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacggtgct 168  Q
    || |||||||| |  ||||||| |||||||||| | ||||||||||| |||||||| |||||    
T  35650 agagtgttcttagcaggtgagt-gtgacgatgggcagtggtggatactgtgtttacagtgct 35590  T

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