View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_483 (Length: 239)
Name: NF10954A_low_483
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_483 |
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Alignment Details
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 14322455 - 14322395
Alignment:
| Q |
52 |
ggtgtcgaagagatttgattgaaggggcacagaaaacaaagaatacataaattgaacagcc |
112 |
Q |
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| T |
14322455 |
ggtgtcgaagagatttgattgaaggggcacagaaaacaaagaatacataaattgaacagcc |
14322395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 14321285 - 14321225
Alignment:
| Q |
52 |
ggtgtcgaagagatttgattgaaggggcacagaaaacaaagaatacataaattgaacagcc |
112 |
Q |
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| T |
14321285 |
ggtgtcaaagagatttgatggaaggggcacagaaaacaaagaatgcataaattgaacagcc |
14321225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 14321155 - 14321112
Alignment:
| Q |
182 |
caagtcatggaaccaagagcaagataaacgcaactaactgatgt |
225 |
Q |
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| T |
14321155 |
caagtcatggaaccaagagcaagataaacgcaactaacttatgt |
14321112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 14322325 - 14322282
Alignment:
| Q |
182 |
caagtcatggaaccaagagcaagataaacgcaactaactgatgt |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14322325 |
caagtcatggaaccaagagcaagataaacgcaactaacttatgt |
14322282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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