View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_484 (Length: 239)

Name: NF10954A_low_484
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_484
NF10954A_low_484
[»] chr8 (9 HSPs)
chr8 (95-221)||(3117707-3117833)
chr8 (93-221)||(1548139-1548267)
chr8 (92-216)||(34784484-34784608)
chr8 (90-221)||(23033395-23033526)
chr8 (91-216)||(20900774-20900899)
chr8 (89-197)||(3277516-3277624)
chr8 (103-166)||(29168561-29168624)
chr8 (91-127)||(15657347-15657383)
chr8 (115-164)||(3376367-3376416)
[»] chr5 (5 HSPs)
chr5 (91-221)||(7992368-7992498)
chr5 (91-213)||(32325779-32325901)
chr5 (91-184)||(12904977-12905070)
chr5 (91-142)||(34641930-34641981)
chr5 (91-127)||(28827503-28827539)
[»] chr7 (6 HSPs)
chr7 (91-216)||(36167696-36167821)
chr7 (90-221)||(12859205-12859336)
chr7 (91-216)||(19886572-19886697)
chr7 (91-216)||(32775171-32775296)
chr7 (89-164)||(5465745-5465820)
chr7 (90-138)||(11600118-11600166)
[»] chr6 (2 HSPs)
chr6 (90-221)||(13425636-13425767)
chr6 (91-124)||(22274411-22274444)
[»] chr2 (7 HSPs)
chr2 (93-216)||(44673172-44673295)
chr2 (91-221)||(25438287-25438417)
chr2 (89-142)||(21006375-21006428)
chr2 (89-142)||(24132209-24132262)
chr2 (95-164)||(37154903-37154972)
chr2 (91-142)||(6536545-6536596)
chr2 (91-127)||(39574644-39574680)
[»] chr4 (7 HSPs)
chr4 (91-218)||(16497873-16498000)
chr4 (93-196)||(2588476-2588579)
chr4 (93-196)||(5650744-5650847)
chr4 (91-166)||(52249500-52249575)
chr4 (163-218)||(16497682-16497737)
chr4 (91-142)||(28075449-28075500)
chr4 (88-142)||(13310357-13310411)
[»] chr3 (5 HSPs)
chr3 (91-197)||(53208669-53208775)
chr3 (95-196)||(32130160-32130261)
chr3 (91-206)||(7322855-7322970)
chr3 (91-163)||(9454604-9454676)
chr3 (91-127)||(1915484-1915520)
[»] scaffold0019 (1 HSPs)
scaffold0019 (19-91)||(119497-119569)
[»] chr1 (2 HSPs)
chr1 (91-142)||(23963006-23963057)
chr1 (91-126)||(50443101-50443136)
[»] scaffold0003 (1 HSPs)
scaffold0003 (91-133)||(247185-247227)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 3117707 - 3117833
Alignment:
Q  95 gtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttctctgt 194  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3117707 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtgttttctctgt 3117806  T
Q  195 tttgctccgtttcctctgttttctctg 221  Q
    ||| ||| |||||||||||||||||||    
T  3117807 tttactctgtttcctctgttttctctg 3117833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 1548139 - 1548267
Alignment:
Q  93 aggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttctct 192  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||    
T  1548139 aggtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttcgatcctacttacgaaccgtgttttctct 1548238  T
Q  193 gttttgctccgtttcctctgttttctctg 221  Q
    ||||||||| |||||||||||||||||||    
T  1548239 gttttgctctgtttcctctgttttctctg 1548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 92 - 216
Target Start/End: Complemental strand, 34784608 - 34784484
Alignment:
Q  92 aaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttctc 191  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||    
T  34784608 aaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacaaaccgtgttttctc 34784509  T
Q  192 tgttttgctccgtttcctctgtttt 216  Q
    |||||||||| |||| |||||||||    
T  34784508 tgttttgctctgttttctctgtttt 34784484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 23033395 - 23033526
Alignment:
Q  90 tcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttc 189  Q
    |||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||| ||||    
T  23033395 tcaaggtactcaggaacgagtcccagcatgtaggatcgcatgatcttacgtgccacaacacctcgaccgtgcttcgatcctacttacgaaccgtgttttc 23033494  T
Q  190 tctgttttgctccgtttcctctgttttctctg 221  Q
    |||||||||||| |||||||||||||||||||    
T  23033495 tctgttttgctctgtttcctctgttttctctg 23033526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 20900774 - 20900899
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||    
T  20900774 caaggtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgactgtgcttcgatcctacttacaaaccgtgttttct 20900873  T
Q  191 ctgttttgctccgtttcctctgtttt 216  Q
    ||| ||||||  |||| |||||||||    
T  20900874 ctgatttgctttgtttactctgtttt 20900899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 3277516 - 3277624
Alignment:
Q  89 atcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggttt 188  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||| ||| ||| |||    
T  3277516 atcaaggtagtcaggaacgaatcccagcatgtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttcaatcctacttacaaacagtgtttt 3277615  T
Q  189 ctctgtttt 197  Q
    |||||||||    
T  3277616 ctctgtttt 3277624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 29168624 - 29168561
Alignment:
Q  103 gaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcga 166  Q
    |||||| ||||||| ||||||||| |||||| ||||||||||||| ||||||||||||||||||    
T  29168624 gaacgactcccagctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcga 29168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 15657347 - 15657383
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcg 127  Q
    |||||||||||||||||||||||||||||||||||||    
T  15657347 caaggtagtcaggaacgagtcccagcacgtaggatcg 15657383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 3376416 - 3376367
Alignment:
Q  115 gcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttc 164  Q
    |||| |||||||| |||||| ||||| ||||||||||| |||||||||||    
T  3376416 gcacataggatcgtacgattctacgtcccacagtaccttgaccgtgcttc 3376367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 7992498 - 7992368
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  7992498 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttct 7992399  T
Q  191 ctgttttgctccgtttcctctgttttctctg 221  Q
    ||||||||||| |||||| || |||||||||    
T  7992398 ctgttttgctctgtttcccctcttttctctg 7992368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 32325901 - 32325779
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  32325901 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttct 32325802  T
Q  191 ctgttttgctccgtttcctctgt 213  Q
    ||||||||||| |||||||||||    
T  32325801 ctgttttgctctgtttcctctgt 32325779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 12905070 - 12904977
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtg 184  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||  || |||||| ||||||||||||||||||||||||||    
T  12905070 caaggtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaacacatcgaccatgcttcgatcctacttacgaaccgtg 12904977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 34641981 - 34641930
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgc 142  Q
    |||||||| ||||| |||||||||||| ||||||||||||||| ||||||||    
T  34641981 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 34641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 28827503 - 28827539
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcg 127  Q
    |||||||| ||||||||||||||||||||||||||||    
T  28827503 caaggtagacaggaacgagtcccagcacgtaggatcg 28827539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 36167821 - 36167696
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |||||    
T  36167821 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccatgttttct 36167722  T
Q  191 ctgttttgctccgtttcctctgtttt 216  Q
    ||||||||||| ||||||||||||||    
T  36167721 ctgttttgctctgtttcctctgtttt 36167696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 12859336 - 12859205
Alignment:
Q  90 tcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttc 189  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  12859336 tcaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccgtgttttc 12859237  T
Q  190 tctgttttgctccgtttcctctgttttctctg 221  Q
    |||| ||||||| |||||||||||||||||||    
T  12859236 tctgatttgctctgtttcctctgttttctctg 12859205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 19886572 - 19886697
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  19886572 caaggtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaactgtgttttct 19886671  T
Q  191 ctgttttgctccgtttcctctgtttt 216  Q
    ||||||||||  ||||||||||||||    
T  19886672 ctgttttgctttgtttcctctgtttt 19886697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 32775171 - 32775296
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    ||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  32775171 caaggtagtcaggaacgagtcccagcatgtaggatcacacgaccttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaactgtgttttct 32775270  T
Q  191 ctgttttgctccgtttcctctgtttt 216  Q
    ||||||||||  ||||||||||||||    
T  32775271 ctgttttgctttgtttcctctgtttt 32775296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 5465820 - 5465745
Alignment:
Q  89 atcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttc 164  Q
    ||||| |||| || || ||||||||||  ||||||||| |||||||||||||||||||   |||||||||||||||    
T  5465820 atcaatgtagccaagatcgagtcccaggtcgtaggatcacacgattttacgtgccacatcccctcgaccgtgcttc 5465745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 11600166 - 11600118
Alignment:
Q  90 tcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttac 138  Q
    ||||||||| ||||| |||||||||||  ||||||||||||||| ||||    
T  11600166 tcaaggtagccaggatcgagtcccagcttgtaggatcgcacgatcttac 11600118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 13425767 - 13425636
Alignment:
Q  90 tcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttc 189  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  13425767 tcaaggtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttatgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttc 13425668  T
Q  190 tctgttttgctccgtttcctctgttttctctg 221  Q
    |||||||||||| ||||||||||||| |||||    
T  13425667 tctgttttgctctgtttcctctgtttcctctg 13425636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 22274411 - 22274444
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtagga 124  Q
    |||||||| |||||||||||||||||||||||||    
T  22274411 caaggtagacaggaacgagtcccagcacgtagga 22274444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 44673172 - 44673295
Alignment:
Q  93 aggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttctct 192  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  44673172 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttctct 44673271  T
Q  193 gttttgctccgtttcctctgtttt 216  Q
    ||||||||| ||||||| ||||||    
T  44673272 gttttgctctgtttcctatgtttt 44673295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 91 - 221
Target Start/End: Original strand, 25438287 - 25438417
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  25438287 caaggtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcgaccgtgctttgatcctacttacgaaccgtgttttct 25438386  T
Q  191 ctgttttgctccgtttcctctgttttctctg 221  Q
    ||||||||||  |||||||||||||||||||    
T  25438387 ctgttttgctttgtttcctctgttttctctg 25438417  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 21006428 - 21006375
Alignment:
Q  89 atcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgc 142  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  21006428 atcaaggtagccaggatcgagtcccagcacgtaggatcgcacgatcttacgtgc 21006375  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 24132209 - 24132262
Alignment:
Q  89 atcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgc 142  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||    
T  24132209 atcaaggtagccaggatcgaatcccagcacgtaggatcgcacgatcttacgtgc 24132262  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 37154972 - 37154903
Alignment:
Q  95 gtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttc 164  Q
    ||||||| ||||||||||| || |||||||||||||||| |||||||||||   | ||||||||||||||    
T  37154972 gtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgccacgacatctcgaccgtgcttc 37154903  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 6536545 - 6536596
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgc 142  Q
    |||||||| ||||| |||||||||||| ||||||||||||||| ||||||||    
T  6536545 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 6536596  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 39574680 - 39574644
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcg 127  Q
    |||||||| ||||||||||||||||||||||||||||    
T  39574680 caaggtagacaggaacgagtcccagcacgtaggatcg 39574644  T

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Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 16498000 - 16497873
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    ||||||||||| |||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  16498000 caaggtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccgtgttttct 16497901  T
Q  191 ctgttttgctccgtttcctctgttttct 218  Q
    ||||||||||| ||||||||||||||||    
T  16497900 ctgttttgctctgtttcctctgttttct 16497873  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 2588579 - 2588476
Alignment:
Q  93 aggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttctct 192  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||||    
T  2588579 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtacttcggtcctacttacgaaccgtgttttctct 2588480  T
Q  193 gttt 196  Q
    ||||    
T  2588479 gttt 2588476  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 5650847 - 5650744
Alignment:
Q  93 aggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttctct 192  Q
    |||||||||||||||||||| ||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||| || | |||||    
T  5650847 aggtagtcaggaacgagtccaagcacgtaggatcgcacaatctcacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccatgttatctct 5650748  T
Q  193 gttt 196  Q
    ||||    
T  5650747 gttt 5650744  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 52249575 - 52249500
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcga 166  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| ||||| ||||||||||||    
T  52249575 caaggtagtcaggaatgagtcccagtacgtaggatcgcacgatcttacgtgccacagcacctctaccgtgcttcga 52249500  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 16497737 - 16497682
Alignment:
Q  163 tcgatcctacttacgaaccgtggtttctctgttttgctccgtttcctctgttttct 218  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  16497737 tcgatcctacttacgaaccgtgttttctctgttttgctctgtttcctctgttttct 16497682  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 28075449 - 28075500
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgc 142  Q
    |||||||| ||||| |||||||||||  ||||||||||||||| ||||||||    
T  28075449 caaggtagccaggatcgagtcccagcttgtaggatcgcacgatcttacgtgc 28075500  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 13310411 - 13310357
Alignment:
Q  88 catcaaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgc 142  Q
    ||||||||||| ||||| |||||||||||  ||||||| ||||||| ||||||||    
T  13310411 catcaaggtagccaggatcgagtcccagcttgtaggattgcacgatcttacgtgc 13310357  T

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Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 53208775 - 53208669
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||||||| |||||    
T  53208775 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgtttcgatcctacttacaaaccgtgttttct 53208676  T
Q  191 ctgtttt 197  Q
    |||||||    
T  53208675 ctgtttt 53208669  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 95 - 196
Target Start/End: Original strand, 32130160 - 32130261
Alignment:
Q  95 gtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttctctgt 194  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  32130160 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccgtgttttctctgt 32130259  T
Q  195 tt 196  Q
    ||    
T  32130260 tt 32130261  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 7322855 - 7322970
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccgtggtttct 190  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  | |||||||||||||||| |||||    
T  7322855 caaggtagccaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcagttctacttacgaaccgtgttttct 7322954  T
Q  191 ctgttttgctccgttt 206  Q
    ||||||||||| ||||    
T  7322955 ctgttttgctctgttt 7322970  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 9454604 - 9454676
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgccacagtacctcgaccgtgctt 163  Q
    ||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||    
T  9454604 caaggtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 9454676  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 1915484 - 1915520
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcg 127  Q
    |||||||| ||||||||||||||||||||||||||||    
T  1915484 caaggtagacaggaacgagtcccagcacgtaggatcg 1915520  T

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Target: scaffold0019 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 119497 - 119569
Alignment:
Q  19 tcagattataccactaaaggaactacgctggtagacgactcaaactcacggaatatgctgctcagtcagcatc 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  119497 tcagattataccactaaaggaactacgctggtagacgactcaaactcacggaatatgctgctcagtcagcatc 119569  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 23963057 - 23963006
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgattttacgtgc 142  Q
    |||||||| ||||| || ||||||||||||||||||||| ||| ||||||||    
T  23963057 caaggtagccaggatcgggtcccagcacgtaggatcgcatgatcttacgtgc 23963006  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 50443101 - 50443136
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatc 126  Q
    |||||||| |||||||||||||||||||||||||||    
T  50443101 caaggtagacaggaacgagtcccagcacgtaggatc 50443136  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 247227 - 247185
Alignment:
Q  91 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgat 133  Q
    |||||||||||||||| ||||||||||||||||| || |||||    
T  247227 caaggtagtcaggaaccagtcccagcacgtaggaacggacgat 247185  T

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