View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_486 (Length: 238)
Name: NF10954A_low_486
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_486 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48623190 - 48623410
Alignment:
| Q |
1 |
gtatatactcgtaaaagaagatatatgcgtatttgaagaaggatctcgtgcggtacgttttggatgtagtatatgatgaatatgtggcaggtttgcttta |
100 |
Q |
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| T |
48623190 |
gtatatactcgtaaaagaagatatatgcttatttgaagaaggatctcctgcggtccgttttggatttagtatatgatgaatatgtgacaggtttgcttta |
48623289 |
T |
|
| Q |
101 |
ttcnnnnnnnnnnnnnnnngaagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatannnnnnngacag |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48623290 |
ttcaaaaaaaaaaaa-----aagtgacaggtttgctaataaattacgtcattgtccatttgctgttagaaagacgaagaattaacatatttttttgacag |
48623384 |
T |
|
| Q |
201 |
agaaaggcaatgaaattaatcatatt |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
48623385 |
agaaaggcaatgaaattaatcatatt |
48623410 |
T |
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