View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10954A_low_487 (Length: 238)

Name: NF10954A_low_487
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10954A_low_487
NF10954A_low_487
[»] chr3 (2 HSPs)
chr3 (36-213)||(19910952-19911130)
chr3 (28-160)||(30406815-30406949)
[»] chr6 (2 HSPs)
chr6 (51-157)||(10382590-10382697)
chr6 (47-158)||(30613996-30614109)
[»] chr5 (1 HSPs)
chr5 (30-136)||(7003523-7003629)
[»] scaffold0728 (2 HSPs)
scaffold0728 (27-131)||(1314-1418)
scaffold0728 (27-131)||(6254-6358)
[»] chr7 (1 HSPs)
chr7 (27-160)||(9084336-9084471)
[»] scaffold0128 (1 HSPs)
scaffold0128 (27-131)||(41446-41550)
[»] chr1 (4 HSPs)
chr1 (27-138)||(17083685-17083796)
chr1 (48-99)||(25094756-25094807)
chr1 (101-134)||(33260486-33260519)
chr1 (101-134)||(33280645-33280678)
[»] chr8 (1 HSPs)
chr8 (63-131)||(30926636-30926704)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 36 - 213
Target Start/End: Complemental strand, 19911130 - 19910952
Alignment:
Q  36 ttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtgggatga 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19911130 ttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgttagaaaataaattattaactatggcgcaaatgtttcatttggggtgggatga 19911031  T
Q  136 gggggaaggcgtggaagtggagaagcagtctaatggtatgggagaaggagttctt--tggagtattggattttattaatg 213  Q
     |||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||  |||||| ||| ||||||||||||    
T  19911030 agggg-aggcgtggaagtggagaagaagtctaagggtatgggagaaagagttcttagtggagtgttgaattttattaatg 19910952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 30406949 - 30406815
Alignment:
Q  28 taggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttgggg 127  Q
    ||||||||||| |||||||||||||   ||| | |||||| | ||||||||||| |||||||| ||||| |||||| |||||||||||||| ||||||||    
T  30406949 taggtgggttgatgatgtccctctttgagttagatttcgttgtttgtttgatttatcagaaaagaaattgttaactgtggcgcaaatgtttgatttgggg 30406850  T
Q  128 tgggatgagg--gggaaggcgtggaagtggagaag 160  Q
    ||| | ||||  ||| |||||||||||||||||||    
T  30406849 tggaacgagggaggggaggcgtggaagtggagaag 30406815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 10382590 - 10382697
Alignment:
Q  51 ttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtgggatg-agggggaaggcgtgg 149  Q
    ||||||||||||||||  |||||||||| || ||| ||||||| || |||||| |||||||||||||| |||| |||||||||| |||||| |||||||     
T  10382590 ttcaggttcgttttcgctgcttgtttgaattatcataaaataattttttaactgtggcgcaaatgtttgatttagggtgggatgaaggggggaggcgtga 10382689  T
Q  150 aagtggag 157  Q
    ||||||||    
T  10382690 aagtggag 10382697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 30614109 - 30613996
Alignment:
Q  47 cctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaacta--tggcgcaaatgtttcatttggggtgggatgagggggaagg 144  Q
    |||||||||||||||||| |||| || |||||||| |||||||||||||    |||    |||||||||| ||| | ||||||||||| ||||||| |||    
T  30614109 cctcttcaggttcgtttttgtcggttatttgatttatcagaaaataaatatgcaacacggtggcgcaaatatttaacttggggtgggacgaggggggagg 30614010  T
Q  145 cgtggaagtggaga 158  Q
    ||||||||||||||    
T  30614009 cgtggaagtggaga 30613996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 7003629 - 7003523
Alignment:
Q  30 ggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtg 129  Q
    |||||||||||||||||||| |||  ||||| |||   || ||||||||||| |||||||||||||| |||| | || ||||||||||| ||||||||||    
T  7003629 ggtgggttggtgatgtcccttttcgagttcgatttttccgtttgtttgatttatcagaaaataaattgttaattgtgtcgcaaatgtttgatttggggtg 7003530  T
Q  130 ggatgag 136  Q
    |||||||    
T  7003529 ggatgag 7003523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0728
Description:

Target: scaffold0728; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 1314 - 1418
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    |||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| | | |||||| |||||| |   |||||||||| ||| |||||||    
T  1314 ataggtgggtaggtgaggtccctcttcaagttcgtttttgtcgcttgtttgatttattacaaaatacattattgatggtggcgcaaatctttgatttggg 1413  T
Q  127 gtggg 131  Q
    |||||    
T  1414 gtggg 1418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0728; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 6254 - 6358
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    |||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||| | | |||||| |||||| |   |||||||||| ||| |||||||    
T  6254 ataggtgggtaggtgaggtccctcttcaagttcgtttttgtcgcttgtttgatttattacaaaatacattattgatggtggcgcaaatctttgatttggg 6353  T
Q  127 gtggg 131  Q
    |||||    
T  6354 gtggg 6358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 9084471 - 9084336
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    |||||||||| ||||| || ||  | ||||||||||||| ||| || ||||||||||| ||||||||||| |||| |   ||||||||||| ||  ||||    
T  9084471 ataggtgggtaggtgaggttcccttgcaggttcgttttcatcggttatttgatttgtctgaaaataaatttttaattgctgcgcaaatgttccagctggg 9084372  T
Q  127 gtgggatgagg--gggaaggcgtggaagtggagaag 160  Q
    |||||| ||||  ||| |||||||||||||||||||    
T  9084371 gtgggacgagggaggggaggcgtggaagtggagaag 9084336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 41446 - 41550
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    ||||||||||||||||| | |||||||  | | | | ||| || ||||||||||| ||||| | ||||||  |||||||||| ||||||||| |||||||    
T  41446 ataggtgggttggtgatcttcctcttcgagataggtatcggcgtttgtttgatttatcagagagtaaatttctaactatggcacaaatgtttaatttggg 41545  T
Q  127 gtggg 131  Q
    |||||    
T  41546 gtggg 41550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 17083685 - 17083796
Alignment:
Q  27 ataggtgggttggtgatgtccctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggg 126  Q
    ||||||||||||| ||| | ||| |||| || || ||||| || || ||||||||||| || ||||||||  ||||  | || |||||||||||||||||    
T  17083685 ataggtgggttggggatattccttttcatgtccgctttcgccggttatttgatttgtctgataataaatttctaaccgtagctcaaatgtttcatttggg 17083784  T
Q  127 gtgggatgaggg 138  Q
    ||||| ||||||    
T  17083785 gtggggtgaggg 17083796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 25094807 - 25094756
Alignment:
Q  48 ctcttcaggttcgttttcgtcgcttgtttgatttgtcagaaaataaattatt 99  Q
    ||||||||||| ||||||||||||| |||  ||| |||||||||||||||||    
T  25094807 ctcttcaggtttgttttcgtcgcttatttattttatcagaaaataaattatt 25094756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 33260486 - 33260519
Alignment:
Q  101 actatggcgcaaatgtttcatttggggtgggatg 134  Q
    |||||||||||||||||||||| |||||||||||    
T  33260486 actatggcgcaaatgtttcattgggggtgggatg 33260519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 33280645 - 33280678
Alignment:
Q  101 actatggcgcaaatgtttcatttggggtgggatg 134  Q
    |||||||||||||||||||||| |||||||||||    
T  33280645 actatggcgcaaatgtttcattgggggtgggatg 33280678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 30926636 - 30926704
Alignment:
Q  63 ttcgtcgcttgtttgatttgtcagaaaataaattattaactatggcgcaaatgtttcatttggggtggg 131  Q
    ||||||||||||||||||| |||||||||||||  ||||||  ||| |||| |||| |||| |||||||    
T  30926636 ttcgtcgcttgtttgatttatcagaaaataaatagttaacttgggcacaaacgtttgatttagggtggg 30926704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University