View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_491 (Length: 237)
Name: NF10954A_low_491
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_491 |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 48066601 - 48066831
Alignment:
| Q |
1 |
gcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
48066601 |
gcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaattaattgtccactatatcttgaaaccacagatt |
48066700 |
T |
|
| Q |
101 |
tcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48066701 |
tcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgtcccacaaaatggcatgacctct |
48066800 |
T |
|
| Q |
201 |
gacagaaatgccattttctttggcaaatttc |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
48066801 |
gacagaaatgccattttctttggcaaatttc |
48066831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 48099546 - 48099776
Alignment:
| Q |
1 |
gcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatt |
100 |
Q |
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||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||||| |
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| T |
48099546 |
gcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacagatc |
48099645 |
T |
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| Q |
101 |
tcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctct |
200 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||| ||||||||| ||| |||| || ||||||||| |
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| T |
48099646 |
ttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacctct |
48099745 |
T |
|
| Q |
201 |
gacagaaatgccattttctttggcaaatttc |
231 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
48099746 |
gacagaaatgccattttctttggcgaatttc |
48099776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 48062512 - 48062742
Alignment:
| Q |
1 |
gcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatt |
100 |
Q |
| |
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||||||| |||||| ||||||||||||||| || ||||||||||| || || ||||||||||||||||||||||| |||| ||||| || || |||| |
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| T |
48062512 |
gcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttgagaccacggatt |
48062611 |
T |
|
| Q |
101 |
tcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctct |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| |||||| |||||| || ||| ||||||| || |||||||||| ||||||||| |
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| T |
48062612 |
tcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaatgttatgacctct |
48062711 |
T |
|
| Q |
201 |
gacagaaatgccattttctttggcaaatttc |
231 |
Q |
| |
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|||||| ||||||||||| || ||||||||| |
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| T |
48062712 |
gacagatatgccattttccttagcaaatttc |
48062742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 48106147 - 48106375
Alignment:
| Q |
1 |
gcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatt |
100 |
Q |
| |
|
|||||||| || |||||||||||| ||||| | ||||||||| || ||||| || |||||||||||||||| ||| |||| ||| ||||||||||| |
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| T |
48106147 |
gcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaacagatt |
48106246 |
T |
|
| Q |
101 |
tcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgttccacaaaatggcatgacctct |
200 |
Q |
| |
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||||||||| || |||| || ||||| || || |||| |||| ||||||| || ||| || ||||||||| ||| |||||| ||||||||| |
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| T |
48106247 |
cgattctttttttcgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatgacctct |
48106346 |
T |
|
| Q |
201 |
gacagaaatgccattttctttggcaaatt |
229 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| |
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| T |
48106347 |
gacagaaattccattatctttagcaaatt |
48106375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 991 - 849
Alignment:
| Q |
1 |
gcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatt |
100 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
991 |
gcattttctccgagtttgtcctaaaaaaatcggttgtggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaaccacagatt |
892 |
T |
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| Q |
101 |
tcattctttttgcagccgcttctcgtaattcttcaggagatag |
143 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
891 |
tcattctttttgcagccgcttctcgtaattcttcaggagatag |
849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 50231241 - 50231389
Alignment:
| Q |
1 |
gcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacagatt |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | | ||| |
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| T |
50231241 |
gcatttttgccgagtttgtcctcaaaaaaccggttgtggacattctcgtttacaacgtcccatgcaatcaattgtccactatatcttgaaaccaaaaatt |
50231340 |
T |
|
| Q |
101 |
tcattctttttgcagccgcttctcgtaattcttcaggagatagggactt |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50231341 |
tcattctttttgcagccgcttctcgtaattcttcaggagatagggactt |
50231389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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