View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10954A_low_497 (Length: 236)
Name: NF10954A_low_497
Description: NF10954A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10954A_low_497 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11749126 - 11749352
Alignment:
| Q |
1 |
tcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcag |
100 |
Q |
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||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11749126 |
tcaagaaagcgagcattcatttttcctgaatcgcaaagcaacgcacaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcaa |
11749225 |
T |
|
| Q |
101 |
catggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataag |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11749226 |
catgattagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaacccaaataag |
11749325 |
T |
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| Q |
201 |
ggattcatcaacaaacccaatattctt |
227 |
Q |
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|||||||||||||||||| || ||||| |
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| T |
11749326 |
ggattcatcaacaaaccccattttctt |
11749352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 52011317 - 52011522
Alignment:
| Q |
1 |
tcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcag |
100 |
Q |
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|||||||||||| ||||||||||||||||||||| | ||| |||| |||||||||||||| |||||||| || ||||||||| ||||||| |||||||| |
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| T |
52011317 |
tcaagaaagcgacaattcatttttctcgaatcacataccaacgcgctaagcctttgtttgagctcatccgaaacaccatcaagcgaaaccattccatcag |
52011416 |
T |
|
| Q |
101 |
catggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataag |
200 |
Q |
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||||||||||||| ||||| ||||| ||||| ||| |||||||| | ||||||| |||||||||||||||| || ||||||||||| ||||||| |
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| T |
52011417 |
catggttagcaagaattttaagagacatttcttgcaacgaaggaaccctaaacctttccctcaccaaatcttctccgtttcttttcggaacccaaataaa |
52011516 |
T |
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| Q |
201 |
ggattc |
206 |
Q |
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|||||| |
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| T |
52011517 |
ggattc |
52011522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 52001452 - 52001669
Alignment:
| Q |
1 |
tcaagaaagcgagcattcatttttctcgaatcacaaagcaatgcgcaaagcctttgtttgaactcatccggaataccatcaagggaaaccaatccatcag |
100 |
Q |
| |
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|||||| || |||||||||||||||| |||||||||||||| |||| |||||||||||| | |||| | || ||||||||| ||| | | ||||||| |
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| T |
52001452 |
tcaagagagtgagcattcatttttcttgaatcacaaagcaacgcgctaagcctttgttttagtgcatcagaaacaccatcaagcgaagcaagtccatcaa |
52001551 |
T |
|
| Q |
101 |
catggttagcaagggctttaaaagacaattcttccaatgaaggaacacaaaaccttctattcaccaaatcttctccattccttttcggaactcaaataag |
200 |
Q |
| |
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|||| || ||||| ||||| ||||| |||| || |||||||||||| || |||| |||| |||||||| |||||| ||| | ||| ||| |||| |
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| T |
52001552 |
catgattggcaagaattttaagagacatttctagcagtgaaggaacacataatcttcccctcacaaaatcttcaccattcagttttgaaacccaagtaag |
52001651 |
T |
|
| Q |
201 |
ggattcatcaacaaaccc |
218 |
Q |
| |
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||||||||| |||||||| |
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| T |
52001652 |
ggattcatcgacaaaccc |
52001669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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